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José A. Ramos Méndez
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The TOPAS tool for particle simulation, a Monte Carlo simulation tool for physics, biology and clinical research
B Faddegon, J Ramos-Méndez, J Schuemann, A McNamara, J Shin, ...
Physica Medica 72, 114-121, 2020
1852020
TOPAS-nBio: an extension to the TOPAS simulation toolkit for cellular and sub-cellular radiobiology
J Schuemann, AL McNamara, J Ramos-Méndez, J Perl, KD Held, ...
Radiation research 191 (2), 125-138, 2019
1702019
Report on G4‐Med, a Geant4 benchmarking system for medical physics applications developed by the Geant4 Medical Simulation Benchmarking Group
P Arce, D Bolst, MC Bordage, JMC Brown, P Cirrone, MA Cortés‐Giraldo, ...
Medical physics 48 (1), 19-56, 2021
1342021
Extension of TOPAS for the simulation of proton radiation effects considering molecular and cellular endpoints
L Polster, J Schuemann, I Rinaldi, L Burigo, AL McNamara, RD Stewart, ...
Physics in Medicine & Biology 60 (13), 5053, 2015
1002015
Validation of the radiobiology toolkit TOPAS-nBio in simple DNA geometries
A McNamara, C Geng, R Turner, JR Mendez, J Perl, K Held, B Faddegon, ...
Physica Medica 33, 207-215, 2017
892017
Monte Carlo simulation of chemistry following radiolysis with TOPAS-nBio
J Ramos-Méndez, J Perl, J Schuemann, A McNamara, H Paganetti, ...
Physics in Medicine & Biology 63 (10), 105014, 2018
842018
A new standard DNA damage (SDD) data format
J Schuemann, AL McNamara, JW Warmenhoven, NT Henthorn, KJ Kirkby, ...
Radiation research 191 (1), 76-92, 2019
662019
Geometrical structures for radiation biology research as implemented in the TOPAS-nBio toolkit
AL McNamara, J Ramos-Méndez, J Perl, K Held, N Dominguez, E Moreno, ...
Physics in Medicine & Biology 63 (17), 175018, 2018
502018
LET-dependent intertrack yields in proton irradiation at ultra-high dose rates relevant for FLASH therapy
J Ramos-Méndez, N Domínguez-Kondo, J Schuemann, A McNamara, ...
Radiation research 194 (4), 351-362, 2020
472020
Radio-enhancement by gold nanoparticles and their impact on water radiolysis for x-ray, proton and carbon-ion beams
B Rudek, A McNamara, J Ramos-Mendez, H Byrne, Z Kuncic, ...
physics in Medicine & Biology 64 (17), 175005, 2019
472019
Evaluation of the influence of physical and chemical parameters on water radiolysis simulations under MeV electron irradiation using Geant4-DNA
WG Shin, J Ramos-Mendez, B Faddegon, HN Tran, C Villagrasa, Y Perrot, ...
Journal of Applied Physics 126 (11), 2019
452019
Dose assessment for the fetus considering scattered and secondary radiation from photon and proton therapy when treating a brain tumor of the mother
C Geng, M Moteabbed, J Seco, Y Gao, XG Xu, J Ramos-Méndez, ...
Physics in Medicine & Biology 61 (2), 683, 2015
422015
A parameter sensitivity study for simulating DNA damage after proton irradiation using TOPAS-nBio
H Zhu, AL McNamara, J Ramos-Mendez, SJ McMahon, NT Henthorn, ...
Physics in Medicine & Biology 65 (8), 085015, 2020
382020
Cellular response to proton irradiation: a simulation study with TOPAS-nBio
H Zhu, AL McNamara, SJ McMahon, J Ramos-Mendez, NT Henthorn, ...
Radiation research 194 (1), 9-21, 2020
372020
Geometrical splitting technique to improve the computational efficiency in Monte Carlo calculations for proton therapy
J Ramos‐Méndez, J Perl, B Faddegon, J Schümann, H Paganetti
Medical physics 40 (4), 041718, 2013
362013
Geometrical splitting technique to improve the computational efficiency in Monte Carlo calculations for proton therapy
J Ramos‐Méndez, J Perl, B Faddegon, J Schümann, H Paganetti
Medical physics 40 (4), 041718, 2013
362013
Independent reaction times method in Geant4‐DNA: Implementation and performance
J Ramos‐Méndez, W Shin, M Karamitros, J Domínguez‐Kondo, NH Tran, ...
Medical physics 47 (11), 5919-5930, 2020
352020
The effect of beam purity and scanner complexity on proton CT accuracy
P Piersimoni, J Ramos‐Mendez, T Geoghegan, VA Bashkirov, ...
Medical physics 44 (1), 284-298, 2017
302017
Geant4-DNA simulation of the pre-chemical stage of water radiolysis and its impact on initial radiochemical yields
WG Shin, J Ramos-Mendez, NH Tran, S Okada, Y Perrot, C Villagrasa, ...
Physica Medica 88, 86-90, 2021
282021
Helium CT: Monte Carlo simulation results for an ideal source and detector with comparison to proton CT
P Piersimoni, BA Faddegon, JR Méndez, RW Schulte, L Volz, J Seco
Medical physics 45 (7), 3264-3274, 2018
282018
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