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Joseph Rogers
Joseph Rogers
Dirección de correo verificada de roche.com
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PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ...
Microbiome 2, 1-15, 2014
2082014
Shared gene expression alterations in nasal and bronchial epithelium for lung cancer detection
JF Perez-Rogers, J Gerrein, C Anderlind, G Liu, S Zhang, Y Alekseyev, ...
JNCI: Journal of the National Cancer Institute 109 (7), djw327, 2017
692017
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data
AL Byrd, JF Perez-Rogers, S Manimaran, E Castro-Nallar, I Toma, ...
BMC bioinformatics 15, 1-14, 2014
692014
Kernelized partial least squares for feature reduction and classification of gene microarray data
WH Land, X Qiao, DE Margolis, WS Ford, CT Paquette, JF Perez-Rogers, ...
BMC systems biology 5, 1-18, 2011
152011
Nasal epithelium gene expression signature and classifier for the prediction of lung cancer
A Spira, M Lenburg, J Perez-Rogers, C Anderlind
US Patent App. 16/300,947, 2019
92019
Leveraging gene expression in the bronchial airway to develop a nasal biomarker for early detection of lung cancer
JF Perez-Rogers, J Gerrein, C Anderlind, RL Kusko, JD Campbell, ...
A107. THE LUNG'S SILVER LINING: AIRWAY AND ALVEOLAR EPITHELIAL BIOLOGY …, 2014
32014
Nasal epithelium gene expression signature and classifier for the prediction of lung cancer
A Spira, ME Lenburg, J Perez-Rogers, C Anderlind
US Patent App. 17/397,905, 2021
12021
Nasal Epithelial Gene Expression Is Altered In Patients With Lung Cancer And Reflects The Cancer-Associated Gene Expression Changes Observed In The Bronchial Epithelium
J Perez-Rogers, J Gerrein, C Anderlind, G Liu, S Zhang, Y Alekseyev, ...
D99. NOVEL TRANSLATIONAL BIOMARKERS IN LUNG CANCER, A7535-A7535, 2016
12016
A Bronchial Airway Gene Expression Signature Associated With Adenocarcinoma Vs. Squamous Cell Lung Cancer
J Zhang, J Perez-Rogers, K Porta-Smith, D Whitney, M Lenburg, A Spira, ...
A71. ONCOGENES AND ANGIOGENESIS IN LUNG TUMORS, A2372-A2372, 2017
2017
A71 ONCOGENES AND ANGIOGENESIS IN LUNG TUMORS: A Bronchial Airway Gene Expression Signature Associated With Adenocarcinoma Vs. Squamous Cell Lung Cancer
J Zhang, J Perez-Rogers, K Porta-Smith, D Whitney, M Lenburg, A Spira, ...
American Journal of Respiratory and Critical Care Medicine 195, 2017
2017
Development of a minimally invasive molecular biomarker for early detection of lung cancer
J Perez-Rogers
2017
Leveraging transcriptomic and genomic data to better select models for preclinical oncology therapeutic development to identify cell lines most similar to patient tumors
Y Cha, A Labradorf, J Perez-Rogers, B Haas, A Lysaght, B Weiner, ...
Cancer Research 76 (14_Supplement), 789-789, 2016
2016
Leveraging transcriptomic data to pinpoint mechanisms of gemcitabine resistance and potential combination therapies for pancreatic cancer.
RL Kusko, Y Cha, J Perez-Rogers, N Caballero, G Koytiger, J Shankar, ...
Journal of Clinical Oncology 34 (15_suppl), e15730-e15730, 2016
2016
D99 NOVEL TRANSLATIONAL BIOMARKERS IN LUNG CANCER: Nasal Epithelial Gene Expression Is Altered In Patients With Lung Cancer And Reflects The Cancer-Associated Gene Expression …
J Perez-Rogers, J Gerrein, C Anderlind, G Liu, S Zhang, Y Alekseyev, ...
American Journal of Respiratory and Critical Care Medicine 193, 1, 2016
2016
Abstract B1-50: Leveraging gene expression in the bronchial airway to develop a nasal biomarker for early detection of lung cancer
JF Perez-Rogers, J Gerrein, C Anderlind, RL Kusko, JD Campbell, ...
Cancer Research 75 (22_Supplement_2), B1-50-B1-50, 2015
2015
Improving pancreatic cancer drug discovery by leveraging genomics to select better in vitro models
Y Cha, J Perez-Rogers, A Lysaght, B Weiner, S Kolitz, F Towfic, J Funt, ...
Cell 10, C3, 2015
2015
Leveraging bronchial airway gene expression to develop a nasal biomarker for lung cancer detection
J Perez-Rogers, J Gerrein, C Anderlind, X Xiao, H Liu, R Kusko, ...
Cancer Research 75 (15_Supplement), 1574-1574, 2015
2015
Airway Gene Expression Alterations Associated With Lung Carcinogenesis In Smokers With COPD
J Kantrowitz, RL Kusko, JF Perez-Rogers, AZ Jiwani, K Porta, DH Whitney, ...
A30. BIG DATA: HARVESTING FRUITS FROM COPD AND LUNG CANCER, A1254-A1254, 2015
2015
Gene and miRNA expression networks specific to never smoker lung adenocarcinoma
R Kusko, C Garrison, T Wang, J Campbell, J Perez-Rogers, L Luo, ...
Cancer Research 74 (19_Supplement), 3554-3554, 2014
2014
Matched Nasal And Bronchial Epithelial Gene Expression Alterations Associated With Chronic Obstructive Pulmonary Disease
AZ Jiwani, RL Kusko, J Perez-Rogers, C Anderlind, K Steiling, K Porta, ...
C107. INFORMING LUNG DISEASE WITH BIOINFORMATICS, A5282-A5282, 2014
2014
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