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Jason E Stajich
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Reconstructing the early evolution of Fungi using a six-gene phylogeny
TY James, F Kauff, CL Schoch, PB Matheny, V Hofstetter, CJ Cox, G Celio, ...
Nature 443 (7113), 818-822, 2006
19362006
The Bioperl toolkit: Perl modules for the life sciences
JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ...
Genome research 12 (10), 1611-1618, 2002
19052002
The generic genome browser: a building block for a model organism system database
LD Stein, C Mungall, SQ Shu, M Caudy, M Mangone, A Day, E Nickerson, ...
Genome research 12 (10), 1599-1610, 2002
13172002
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
J Kämper, R Kahmann, M Bölker, LJ Ma, T Brefort, BJ Saville, F Banuett, ...
Nature 444 (7115), 97-101, 2006
12352006
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
LD Stein, Z Bao, D Blasiar, T Blumenthal, MR Brent, N Chen, A Chinwalla, ...
PLoS biology 1 (2), e45, 2003
10642003
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
F Martin, A Aerts, D Ahrén, A Brun, EGJ Danchin, F Duchaussoy, J Gibon, ...
Nature 452 (7183), 88-92, 2008
10282008
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
JW Spatafora, Y Chang, GL Benny, K Lazarus, ME Smith, ML Berbee, ...
Mycologia 108 (5), 1028-1046, 2016
9622016
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
DA Fitzpatrick, ME Logue, JE Stajich, G Butler
BMC evolutionary biology 6 (1), 99, 2006
5962006
Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak
JA Fraser, SS Giles, EC Wenink, SG Geunes-Boyer, JR Wright, ...
Nature 437 (7063), 1360-1364, 2005
5802005
Genome sequence of the model mushroom Schizophyllum commune
RA Ohm, JF De Jong, LG Lugones, A Aerts, E Kothe, JE Stajich, ...
Nature biotechnology 28 (9), 957-963, 2010
5182010
Ganglioside-induced differentiation-associated protein-1 is mutant in Charcot-Marie-Tooth disease type 4A/8q21
RV Baxter, KB Othmane, JM Rochelle, JE Stajich, C Hulette, ...
Nature genetics 30 (1), 21, 2002
514*2002
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
JE Stajich, SK Wilke, D Ahrén, CH Au, BW Birren, M Borodovsky, C Burns, ...
Proceedings of the National Academy of Sciences 107 (26), 11889-11894, 2010
4342010
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ...
Genome biology 11 (7), R73, 2010
3972010
The evolution of mammalian gene families
JP Demuth, TD Bie, JE Stajich, N Cristianini, MW Hahn
PloS one 1 (1), e85, 2006
3542006
The fungi
JE Stajich, ML Berbee, M Blackwell, DS Hibbett, TY James, JW Spatafora, ...
Current Biology 19 (18), R840-R845, 2009
353*2009
Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation
G Janbon, KL Ormerod, D Paulet, EJ Byrnes III, V Yadav, G Chatterjee, ...
PLoS genetics 10 (4), e1004261, 2014
3402014
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
TJ Sharpton, JE Stajich, SD Rounsley, MJ Gardner, JR Wortman, ...
Genome Research 19 (10), 1722-1731, 2009
3232009
FungiDB: an integrated functional genomics database for fungi
JE Stajich, T Harris, BP Brunk, J Brestelli, S Fischer, OS Harb, ...
Nucleic acids research 40 (D1), D675-D681, 2012
3052012
Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data
EB Rosenblum, TY James, KR Zamudio, TJ Poorten, D Ilut, D Rodriguez, ...
Proceedings of the National Academy of Sciences 110 (23), 9385-9390, 2013
2982013
Shared signatures of parasitism and phylogenomics unite cryptomycota and microsporidia
TY James, A Pelin, L Bonen, S Ahrendt, D Sain, N Corradi, JE Stajich
Current Biology 23 (16), 1548-1553, 2013
2842013
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