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Attila Gabor
Attila Gabor
Computational Biomedicine, Heidelberg University
Dirección de correo verificada de uni-heidelberg.de
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Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis
D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ...
Molecular systems biology 17 (3), e9923, 2021
1962021
Robust and efficient parameter estimation in dynamic models of biological systems
A Gábor, JR Banga
BMC systems biology 9, 1-25, 2015
1772015
AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology
E Balsa-Canto, D Henriques, A Gábor, JR Banga
Bioinformatics 32 (21), 3357-3359, 2016
1542016
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems
A Gábor, AF Villaverde, JR Banga
BMC systems biology 11, 1-16, 2017
1342017
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses
A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ...
Molecular Systems Biology 17 (1), e9730, 2021
1182021
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data
J Tanevski, ROR Flores, A Gabor, D Schapiro, J Saez-Rodriguez
Genome biology 23 (1), 97, 2022
932022
Analysis of the human kinome and phosphatome by mass cytometry reveals overexpression-induced effects on cancer-related signaling
XK Lun, D Szklarczyk, A Gábor, N Dobberstein, VRT Zanotelli, ...
Molecular cell 74 (5), 1086-1102. e5, 2019
372019
Bringing data from curated pathway resources to Cytoscape with OmniPath
F Ceccarelli, D Turei, A Gabor, J Saez-Rodriguez
Bioinformatics 36 (8), 2632-2633, 2020
352020
Modeling and identification of a nuclear reactor with temperature effects and xenon poisoning
A Gábor, C Fazekas, G Szederkényi, KM Hangos
European journal of control 17 (1), 104-115, 2011
352011
Deciphering the signaling network of breast cancer improves drug sensitivity prediction
M Tognetti, A Gabor, M Yang, V Cappelletti, J Windhager, OM Rueda, ...
Cell Systems 12 (5), 401-418. e12, 2021
312021
New insights into the mechanisms underlying 5-fluorouracil-induced intestinal toxicity based on transcriptomic and metabolomic responses in human intestinal organoids
D Rodrigues, T de Souza, L Coyle, M Di Piazza, B Herpers, S Ferreira, ...
Archives of Toxicology 95, 2691-2718, 2021
302021
Model complexity reduction of chemical reaction networks using mixed-integer quadratic programming
R Hannemann-Tamás, A Gabor, G Szederkenyi, KM Hangos
Computers & Mathematics with Applications 65 (10), 1575-1595, 2013
232013
Integration of temporal single cell cellular stress response activity with logic-ODE modeling reveals activation of ATF4-CHOP axis as a critical predictor of drug-induced liver …
LS Wijaya, P Trairatphisan, A Gabor, M Niemeijer, J Keet, AA Morera, ...
Biochemical Pharmacology 190, 114591, 2021
222021
Converting networks to predictive logic models from perturbation signalling data with CellNOpt
E Gjerga, P Trairatphisan, A Gabor, H Koch, C Chevalier, F Ceccarelli, ...
Bioinformatics 36 (16), 4523-4524, 2020
202020
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data
J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, ...
Life Science Alliance 3 (11), 2020
192020
Reaction network realizations of rational biochemical systems and their structural properties
A Gábor, KM Hangos, JR Banga, G Szederkényi
Journal of Mathematical Chemistry 53, 1657-1686, 2015
162015
Model reduction in bio-chemical reaction networks with Michaelis-Menten kinetics
KM Hangos, A Gábor, G Szederkényi
2013 European Control Conference (ECC), 4478-4483, 2013
152013
Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd
A Gabor, M Tognetti, A Driessen, J Tanevski, B Guo, W Cao, H Shen, T Yu, ...
Molecular systems biology 17 (10), e10402, 2021
142021
Improved parameter estimation in kinetic models: selection and tuning of regularization methods
A Gábor, JR Banga
Computational Methods in Systems Biology: 12th International Conference …, 2014
112014
Parallel ant colony optimization for the training of cell signaling networks
P González, R Prado-Rodriguez, A Gábor, J Saez-Rodriguez, JR Banga, ...
Expert Systems with Applications 208, 118199, 2022
92022
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Artículos 1–20