Sangerbox: a comprehensive, interaction‐friendly clinical bioinformatics analysis platform W Shen, Z Song, X Zhong, M Huang, D Shen, P Gao, X Qian, M Wang, ... Imeta 1 (3), e36, 2022 | 391* | 2022 |
Complex heatmap visualization Z Gu Imeta 1 (3), e43, 2022 | 279* | 2022 |
Majorbio Cloud: A one‐stop, comprehensive bioinformatic platform for multiomics analyses Y Ren, G Yu, C Shi, L Liu, Q Guo, C Han, D Zhang, L Zhang, B Liu, H Gao, ... IMeta 1 (2), e12, 2022 | 273* | 2022 |
ImageGP: An easy‐to‐use data visualization web server for scientific researchers T Chen, YX Liu, L Huang Imeta 1 (1), e5, 2022 | 222* | 2022 |
iNAP: an integrated network analysis pipeline for microbiome studies K Feng, X Peng, Z Zhang, S Gu, Q He, W Shen, Z Wang, D Wang, Q Hu, ... IMeta 1 (2), e13, 2022 | 137* | 2022 |
ggClusterNet: An R package for microbiome network analysis and modularity‐based multiple network layouts T Wen, P Xie, S Yang, G Niu, X Liu, Z Ding, C Xue, YX Liu, Q Shen, ... Imeta 1 (3), e32, 2022 | 93* | 2022 |
Linking soil fungi to bacterial community assembly in arid ecosystems S Jiao, H Chu, B Zhang, X Wei, W Chen, G Wei IMeta 1 (1), e2, 2022 | 83* | 2022 |
Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp S Chen Imeta 2 (2), e107, 2023 | 70* | 2023 |
Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data S Xu, L Li, X Luo, M Chen, W Tang, L Zhan, Z Dai, TT Lam, Y Guan, G Yu IMeta 1 (4), e56, 2022 | 69* | 2022 |
MetOrigin: discriminating the origins of microbial metabolites for integrative analysis of the gut microbiome and metabolome G Yu, C Xu, D Zhang, F Ju, Y Ni IMeta 1 (1), e10, 2022 | 69* | 2022 |
Deciphering factors driving soil microbial life‐history strategies in restored grasslands Y Yang, Y Dou, B Wang, Z Xue, Y Wang, S An, SX Chang IMeta 2 (1), e66, 2023 | 67* | 2023 |
Using PhyloSuite for molecular phylogeny and tree‐based analyses CY Xiang, F Gao, I Jakovlić, HP Lei, Y Hu, H Zhang, H Zou, GT Wang, ... Imeta 2 (1), e87, 2023 | 54* | 2023 |
OmicStudio: A composable bioinformatics cloud platform with real‐time feedback that can generate high‐quality graphs for publication F Lyu, F Han, C Ge, W Mao, L Chen, H Hu, G Chen, Q Lang, C Fang Imeta 2 (1), e85, 2023 | 49 | 2023 |
EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research YX Liu, L Chen, T Ma, X Li, M Zheng, X Zhou, L Chen, X Qian, J Xi, H Lu, ... IMeta 2 (1), e83, 2023 | 44 | 2023 |
Differential microbial assembly processes and co‐occurrence networks in the soil‐root continuum along an environmental gradient Y Zhong, PO Sorensen, G Zhu, X Jia, J Liu, Z Shangguan, R Wang, ... imeta 1 (2), e18, 2022 | 41 | 2022 |
Toward understanding the genetic bases underlying plant‐mediated “cry for help” to the microbiota Z Wang, Y Song IMeta 1 (1), e8, 2022 | 39 | 2022 |
A painless way to customize Circos plot: From data preparation to visualization using TBtools C Chen, Y Wu, R Xia Imeta 1 (3), e35, 2022 | 36 | 2022 |
Metabolite profiling of human‐originated Lachnospiraceae at the strain level R Abdugheni, WZ Wang, YJ Wang, MX Du, FL Liu, N Zhou, CY Jiang, ... Imeta 1 (4), e58, 2022 | 33 | 2022 |
DeepKla: An attention mechanism‐based deep neural network for protein lysine lactylation site prediction H Lv, FY Dao, H Lin iMeta 1 (1), e11, 2022 | 28* | 2022 |
Destabilized microbial networks with distinct performances of abundant and rare biospheres in maintaining networks under increasing salinity stress C Li, L Jin, C Zhang, S Li, T Zhou, Z Hua, L Wang, S Ji, Y Wang, Y Gan, ... iMeta 2 (1), e79, 2023 | 27 | 2023 |