Eric J. Deeds
Eric J. Deeds
Professor, UCLA
Verified email at - Homepage
Cited by
Cited by
Curvature in metabolic scaling
T Kolokotrones, V Savage, EJ Deeds, W Fontana
Nature 464 (7289), 753-756, 2010
Sizing up allometric scaling theory
VM Savage, EJ Deeds, W Fontana
PLoS computational biology 4 (9), e1000171, 2008
A simple physical model for scaling in protein-protein interaction networks
EJ Deeds, O Ashenberg, EI Shakhnovich
Proceedings of the National Academy of Sciences 103 (2), 311-316, 2006
Crosstalk and the evolution of specificity in two-component signaling
MA Rowland, EJ Deeds
Biophysical Journal 106 (2), 378a, 2014
Fundamental trade-offs between information flow in single cells and cellular populations
R Suderman, JA Bachman, A Smith, PK Sorger, EJ Deeds
Proceedings of the National Academy of Sciences 114 (22), 5755-5760, 2017
Machine learning classification can reduce false positives in structure-based virtual screening
YO Adeshina, EJ Deeds, J Karanicolas
Proceedings of the National Academy of Sciences 117 (31), 18477-18488, 2020
Protein structure and evolutionary history determine sequence space topology
BE Shakhnovich, E Deeds, C Delisi, E Shakhnovich
Genome research 15 (3), 385-392, 2005
Robust protein–protein interactions in crowded cellular environments
EJ Deeds, O Ashenberg, J Gerardin, EI Shakhnovich
Proceedings of the National Academy of Sciences 104 (38), 14952-14957, 2007
Understanding ensemble protein folding at atomic detail
IA Hubner, EJ Deeds, EI Shakhnovich
Proceedings of the National Academy of Sciences 103 (47), 17747-17752, 2006
Crosstalk and competition in signaling networks
MA Rowland, W Fontana, EJ Deeds
Biophysical journal 103 (11), 2389-2398, 2012
Machines vs. ensembles: effective MAPK signaling through heterogeneous sets of protein complexes
R Suderman, EJ Deeds
PLoS computational biology 9 (10), e1003278, 2013
High-resolution protein folding with a transferable potential
IA Hubner, EJ Deeds, EI Shakhnovich
Proceedings of the National Academy of Sciences 102 (52), 18914-18919, 2005
Combinatorial complexity and compositional drift in protein interaction networks
EJ Deeds, J Krivine, J Feret, V Danos, W Fontana
PloS one 7 (3), e32032, 2012
Optimizing ring assembly reveals the strength of weak interactions
EJ Deeds, JA Bachman, W Fontana
Proceedings of the National Academy of Sciences 109 (7), 2348-2353, 2012
Prokaryotic phylogenies inferred from protein structural domains
EJ Deeds, H Hennessey, EI Shakhnovich
Genome Research 15 (3), 393-402, 2005
Maturation of the proteasome core particle induces an affinity switch that controls regulatory particle association
PS Wani, MA Rowland, A Ondracek, EJ Deeds, J Roelofs
Nature communications 6 (1), 6384, 2015
Protein evolution within a structural space
EJ Deeds, NV Dokholyan, EI Shakhnovich
Biophysical journal 85 (5), 2962-2972, 2003
Structural properties of non-traditional drug targets present new challenges for virtual screening
R Gowthaman, EJ Deeds, J Karanicolas
Journal of chemical information and modeling 53 (8), 2073-2081, 2013
A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data
SM Cooley, T Hamilton, SD Aragones, JCJ Ray, EJ Deeds
Biorxiv, 689851, 2019
Crosstalk and the evolvability of intracellular communication
MA Rowland, JM Greenbaum, EJ Deeds
Nature Communications 8 (1), 16009, 2017
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