| Histone modification levels are predictive for gene expression R Karlić, HR Chung, J Lasserre, K Vlahoviček, M Vingron Proceedings of the National Academy of Sciences 107 (7), 2926-2931, 2010 | 779 | 2010 |
| Cell-of-origin chromatin organization shapes the mutational landscape of cancer P Polak, R Karlić, A Koren, R Thurman, R Sandstrom, MS Lawrence, ... Nature 518 (7539), 360-364, 2015 | 484 | 2015 |
| A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes M Flemr, R Malik, V Franke, J Nejepinska, R Sedlacek, K Vlahovicek, ... Cell 155 (4), 807-816, 2013 | 258 | 2013 |
| Prediction of protein–protein interaction sites in sequences and 3D structures by random forests M Šikić, S Tomić, K Vlahoviček PLoS computational biology 5 (1), e1000278, 2009 | 184 | 2009 |
| Genomation: a toolkit to summarize, annotate and visualize genomic intervals A Akalin, V Franke, K Vlahoviček, CE Mason, D Schübeler Bioinformatics 31 (7), 1127-1129, 2015 | 182 | 2015 |
| PSAIA–protein structure and interaction analyzer J Mihel, M Šikić, S Tomić, B Jeren, K Vlahoviček BMC structural biology 8 (1), 1-11, 2008 | 171 | 2008 |
| DNA analysis servers: plot. it, bend. it, model. it and IS K Vlahovicˇek, L Kajan, S Pongor Nucleic Acids Research 31 (13), 3686-3687, 2003 | 166 | 2003 |
| Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena MG Munteanu, K Vlahovicek, S Parthasarathy, I Simon, S Pongor Trends in biochemical sciences 23 (9), 341-347, 1998 | 160 | 1998 |
| Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity F Supek, K Vlahoviček BMC bioinformatics 6 (1), 1-15, 2005 | 143 | 2005 |
| INCA: synonymous codon usage analysis and clustering by means of self-organizing map F Supek, K Vlahoviček Bioinformatics 20 (14), 2329-2330, 2004 | 123 | 2004 |
| The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing K Abe, R Yamamoto, V Franke, M Cao, Y Suzuki, MG Suzuki, ... The EMBO journal 34 (11), 1523-1537, 2015 | 107 | 2015 |
| Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes V Franke, S Ganesh, R Karlic, R Malik, J Pasulka, F Horvat, M Kuzman, ... Genome research 27 (8), 1384-1394, 2017 | 98 | 2017 |
| Translational selection is ubiquitous in prokaryotes F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc PLoS genetics 6 (6), e1001004, 2010 | 87 | 2010 |
| Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration B Lucic, HC Chen, M Kuzman, E Zorita, J Wegner, V Minneker, W Wang, ... Nature communications 10 (1), 1-12, 2019 | 62 | 2019 |
| Prediction of protein functional domains from sequences using artificial neural networks J Murvai, K Vlahoviček, C Szepesvári, S Pongor Genome research 11 (8), 1410-1417, 2001 | 56 | 2001 |
| Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans M Harcet, M Roller, H Ćetković, D Perina, M Wiens, WEG Müller, ... Molecular biology and evolution 27 (12), 2747-2756, 2010 | 55 | 2010 |
| Environmental shaping of codon usage and functional adaptation across microbial communities M Roller, V Lucić, I Nagy, T Perica, K Vlahoviček Nucleic acids research 41 (19), 8842-8852, 2013 | 51 | 2013 |
| Distribution of sequence-dependent curvature in genomic DNA sequences A Gabrielian, K Vlahovicek, S Pongor FEBS letters 406 (1-2), 69-74, 1997 | 49 | 1997 |
| Long non-coding RNA exchange during the oocyte-to-embryo transition in mice R Karlic, S Ganesh, V Franke, E Svobodova, J Urbanova, Y Suzuki, F Aoki, ... Dna Research 24 (2), 129-141, 2017 | 48 | 2017 |
| Highly reactive cysteine residues are part of the substrate binding site of mammalian dipeptidyl peptidases III M Abramić, Š Šimaga, M Osmak, L Čičin-Šain, B Vukelić, K Vlahoviček, ... The international journal of biochemistry & cell biology 36 (3), 434-446, 2004 | 47 | 2004 |
Vedran FrankeMax Delbrueck CenterVerified email at mdc-berlin.de
