José Afonso Guerra-Assunção

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Taane G. ClarkProfessor of Genomics & Global Health, London School of Hygiene and Tropical MedicineVerified email at lshtm.ac.uk
Francesc CollLondon School of Hygiene & Tropical MedicineVerified email at lshtm.ac.uk
Julian ParkhillUniversity of CambridgeVerified email at cam.ac.uk
Miguel ViveirosProfessor of Microbiology, Inst. Higiene Medicina Tropical, Universidade NOVA de Lisboa, PortugalVerified email at ihmt.unl.pt
Rein HoubenLondon School of Hygiene and Tropical MedicineVerified email at lshtm.ac.uk
arnab painProfessor, KAUST; Distinguished Professor, Hokkaido UniversityVerified email at kaust.edu.sa
Anton EnrightGroup Leader, Department of Pathology, University of CambridgeVerified email at cam.ac.uk
Brendan WrenProfessor of Pathogen Molecular BiologyVerified email at lshtm.ac.uk
Harpreet SainiBioinformatician, European Bioinformatics InstituteVerified email at ebi.ac.uk
Adrian L HarrisProfessor of Medical Oncology, Oxford UniversityVerified email at oncology.ox.ac.uk
judith BreuerProfessor of virology University College LondonVerified email at ucl.ac.uk
Lucia CondeUCL Cancer InstituteVerified email at ucl.ac.uk
Sebastien GagneuxSwiss Tropical and Public Health InstituteVerified email at swisstph.ch
Roland BroschInstitut Pasteur ParisVerified email at pasteur.fr
Marcel BehrMcGill UniversityVerified email at mcgill.ca
Kate WitkowskaPostdoctoral ResearcherVerified email at qmul.ac.uk
Mark CaulfieldWilliam Harvey Research Institute & the NIHR Biomedical Research Centre at Barts, Queen MaryVerified email at qmul.ac.uk
Shu YeNational University of SingaporeVerified email at nus.edu.sg
Sam AlsfordLondon School of Hygiene & Tropical MedicineVerified email at lshtm.ac.uk
David HornUniversity of DundeeVerified email at dundee.ac.uk

José Afonso Guerra-Assunção

University College London, London, United Kingdom

Verified email at ucl.ac.uk - Homepage

Viral Phylogenomics Computational Biology microRNAs Evolution Pathogen Genomics


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The zebrafish reference genome sequence and its relationship to the human genome K Howe, MD Clark, CF Torroja, J Torrance, C Berthelot, M Muffato, ... Nature 496 (7446), 498-503, 2013	3772	2013
Mouse genomic variation and its effect on phenotypes and gene regulation TM Keane, L Goodstadt, P Danecek, MA White, K Wong, B Yalcin, ... Nature 477 (7364), 289-294, 2011	1412	2011
The BioMart community portal: an innovative alternative to large, centralized data repositories D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ... Nucleic acids research 43 (W1), W589-W598, 2015	662	2015
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains F Coll, R McNerney, JA Guerra-Assunção, JR Glynn, J Perdigão, ... Nature communications 5 (1), 1-5, 2014	461	2014
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences F Coll, R McNerney, MD Preston, JA Guerra-Assunção, A Warry, ... Genome medicine 7 (1), 1-10, 2015	329	2015
Meta-analysis of tumor-and T cell-intrinsic mechanisms of sensitization to checkpoint inhibition K Litchfield, JL Reading, C Puttick, K Thakkar, C Abbosh, R Bentham, ... Cell 184 (3), 596-614. e14, 2021	210	2021
Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ... Elife 4, e05166, 2015	208	2015
Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma J Okosun, RL Wolfson, J Wang, S Araf, L Wilkins, BM Castellano, ... Nature genetics 48 (2), 183-188, 2016	177	2016
Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a … JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ... The Journal of infectious diseases 211 (7), 1154-1163, 2015	167	2015
Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia C Camps, HK Saini, DR Mole, H Choudhry, M Reczko, ... Molecular cancer 13 (1), 1-21, 2014	150	2014
Spatial heterogeneity of the T cell receptor repertoire reflects the mutational landscape in lung cancer K Joshi, MR de Massy, M Ismail, JL Reading, I Uddin, A Woolston, ... Nature medicine 25 (10), 1549-1559, 2019	108	2019
PolyTB: a genomic variation map for Mycobacterium tuberculosis F Coll, M Preston, JA Guerra-Assunção, G Hill-Cawthorn, D Harris, ... Tuberculosis 94 (3), 346-354, 2014	98	2014
Whole genome sequencing shows a low proportion of tuberculosis disease is attributable to known close contacts in rural Malawi JR Glynn, JA Guerra-Assunção, RMGJ Houben, L Sichali, T Mzembe, ... PloS one 10 (7), e0132840, 2015	92	2015
Genome-wide saturation mutagenesis of Burkholderia pseudomallei K96243 predicts essential genes and novel targets for antimicrobial development MG Moule, CM Hemsley, Q Seet, JA Guerra-Assunção, J Lim, ... MBio 5 (1), e00926-13, 2014	80	2014
Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ... Scientific reports 5 (1), 1-15, 2015	78	2015
MapMi: automated mapping of microRNA loci JA Guerra-Assunção, AJ Enright BMC bioinformatics 11 (1), 1-7, 2010	69	2010
The T cell differentiation landscape is shaped by tumour mutations in lung cancer E Ghorani, JL Reading, JY Henry, MR Massy, R Rosenthal, V Turati, ... Nature cancer 1 (5), 546-561, 2020	58	2020
Large-scale analysis of microRNA evolution JA Guerra-Assunção, AJ Enright BMC genomics 13 (1), 1-12, 2012	57	2012
Extent, causes, and consequences of small RNA expression variation in human adipose tissue L Parts, ÅK Hedman, S Keildson, AJ Knights, C Abreu-Goodger, ... PLoS genetics 8 (5), e1002704, 2012	56	2012
Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data B Sobkowiak, JR Glynn, RMGJ Houben, K Mallard, JE Phelan, ... BMC genomics 19 (1), 1-15, 2018	50	2018

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