| NOTCH1 activation compensates BRCA1 deficiency and promotes triple-negative breast cancer formation K Miao, JH Lei, MV Valecha, A Zhang, J Xu, L Wang, X Lyu, S Chen, ... Nature communications 11 (1), 3256, 2020 | 73 | 2020 |
| Molecular landscape and subtype-specific therapeutic response of nasopharyngeal carcinoma revealed by integrative pharmacogenomics RB Ding, P Chen, BK Rajendran, X Lyu, H Wang, J Bao, J Zeng, W Hao, ... Nature Communications 12 (1), 3046, 2021 | 55 | 2021 |
| BRCA1 represses DNA replication initiation through antagonizing estrogen signaling and maintains genome stability in parallel with WEE1–MCM2 signaling during pregnancy X Xu, E Chen, L Mo, L Zhang, F Shao, K Miao, J Liu, SM Su, M Valecha, ... Human molecular genetics 28 (5), 842-857, 2019 | 16 | 2019 |
| Somatic variant calling from single-cell DNA sequencing data M Valecha, D Posada Computational and Structural Biotechnology Journal 20, 2978-2985, 2022 | 14 | 2022 |
| Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing JM Alves, S Prado-López, L Tomás, M Valecha, N Estévez-Gómez, ... Cancer letters 543, 215767, 2022 | 10 | 2022 |
| SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data S Kang, N Borgsmüller, M Valecha, J Kuipers, JM Alves, S Prado-López, ... Genome Biology 23 (1), 248, 2022 | 9 | 2022 |
| Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data M Edrisi, MV Valecha, SBV Chowdary, S Robledo, HA Ogilvie, D Posada, ... Bioinformatics 38 (Supplement_1), i195-i202, 2022 | 6 | 2022 |
| Comparative analysis of capture methods for genomic profiling of circulating tumor cells in colorectal cancer JM Alves, N Estévez-Gómez, M Valecha, S Prado-López, L Tomás, ... Genomics 114 (6), 110500, 2022 | 4 | 2022 |
| Single-cell mtDNA heteroplasmy in colorectal cancer J Almeida, A Pérez-Figueroa, JM Alves, M Valecha, S Prado-López, ... Genomics 114 (2), 110315, 2022 | 4 | 2022 |
| Apert's syndrome: Study by whole exome sequencing A Munshi, P Khetarpal, S Das, V Rao, M Valecha, M Bansal, R Kumar Genes & diseases 5 (2), 119-122, 2018 | 2 | 2018 |
| Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues N Borgsmüller, M Valecha, J Kuipers, N Beerenwinkel, D Posada Cell Genomics 3 (9), 2023 | 1 | 2023 |
| Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data (vol 38, pg i195, 2022) M Edrisi, MV Valecha, SB Chowdary, S Robledo, HA Ogilvie, D Posada, ... BIOINFORMATICS 39 (5), 2023 | | 2023 |
| Erratum: Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data (Bioinformatics (2022) 38: 1 (i195–i202 M Edrisi, MV Valecha, SBV Chowdary, S Robledo, HA Ogilvie, D Posada, ... Bioinformatics 39 (5), btad321, 2023 | | 2023 |
| DelSIEVE: joint inference of single-nucleotide variants, somatic deletions, and cell phylogeny from single-cell DNA sequencing data S Kang, N Borgsmüller, M Valecha, M Markowska, J Kuipers, ... bioRxiv, 2023.09. 09.556903, 2023 | | 2023 |
| SB Digestor: a tailored driver gene identification tool for dissecting heterogeneous Sleeping Beauty transposon-induced tumors A Zhang, L Wang, JH Lei, Z Miao, MV Valecha, P Hu, K Miao, CX Deng International Journal of Biological Sciences 19 (6), 1764, 2023 | | 2023 |
| Single-cell phylogenies reveal deviations from clock-like, neutral evolution in cancer and healthy tissues N Borgsmüller, M Valecha, J Kuipers, N Beerenwinkel, D Posada bioRxiv, 2022.08. 09.503287, 2022 | | 2022 |
