Peter L. Freddolino
Peter L. Freddolino
Assistant Professor
Verified email at umich.edu - Homepage
TitleCited byYear
Accelerating molecular modeling applications with graphics processors
JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten
Journal of computational chemistry 28 (16), 2618-2640, 2007
7902007
Molecular dynamics simulations of the complete satellite tobacco mosaic virus
PL Freddolino, AS Arkhipov, SB Larson, A McPherson, K Schulten
Structure 14 (3), 437-449, 2006
4992006
Ten-microsecond molecular dynamics simulation of a fast-folding WW domain
PL Freddolino, F Liu, M Gruebele, K Schulten
Biophysical journal 94 (10), L75-L77, 2008
3662008
Prediction of structure and function of G protein-coupled receptors
N Vaidehi, WB Floriano, R Trabanino, SE Hall, P Freddolino, EJ Choi, ...
Proceedings of the National Academy of Sciences 99 (20), 12622-12627, 2002
3412002
Coarse grained protein− lipid model with application to lipoprotein particles
AY Shih, A Arkhipov, PL Freddolino, K Schulten
The Journal of Physical Chemistry B 110 (8), 3674-3684, 2006
3032006
Challenges in protein-folding simulations
PL Freddolino, CB Harrison, Y Liu, K Schulten
Nature physics 6 (10), 751-758, 2010
2912010
Stability and dynamics of virus capsids described by coarse-grained modeling
A Arkhipov, PL Freddolino, K Schulten
Structure 14 (12), 1767-1777, 2006
2462006
Force field bias in protein folding simulations
PL Freddolino, S Park, B Roux, K Schulten
Biophysical journal 96 (9), 3772-3780, 2009
1952009
The predicted 3D structure of the human D2 dopamine receptor and the binding site and binding affinities for agonists and antagonists
MYS Kalani, N Vaidehi, SE Hall, RJ Trabanino, PL Freddolino, MA Kalani, ...
Proceedings of the National Academy of Sciences 101 (11), 3815-3820, 2004
1612004
Common structural transitions in explicit-solvent simulations of villin headpiece folding
PL Freddolino, K Schulten
Biophysical journal 97 (8), 2338-2347, 2009
1542009
Bacterial adaptation through loss of function
AK Hottes, PL Freddolino, A Khare, ZN Donnell, JC Liu, S Tavazoie
PLoS genetics 9 (7), 2013
1492013
Predicted 3D structure for the human β2 adrenergic receptor and its binding site for agonists and antagonists
PL Freddolino, MYS Kalani, N Vaidehi, WB Floriano, SE Hall, ...
Proceedings of the National Academy of Sciences 101 (9), 2736-2741, 2004
1412004
Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations
AY Shih, PL Freddolino, A Arkhipov, K Schulten
Journal of structural biology 157 (3), 579-592, 2007
1392007
Ab initio protein structure prediction
J Lee, PL Freddolino, Y Zhang
From protein structure to function with bioinformatics, 3-35, 2017
1302017
Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum
A Arkhipov, PL Freddolino, K Imada, K Namba, K Schulten
Biophysical journal 91 (12), 4589-4597, 2006
1212006
Molecular mechanism of ligand recognition by NR3 subtype glutamate receptors
Y Yao, CB Harrison, PL Freddolino, K Schulten, ML Mayer
The EMBO journal 27 (15), 2158-2170, 2008
1052008
Disassembly of nanodiscs with cholate
AY Shih, PL Freddolino, SG Sligar, K Schulten
Nano letters 7 (6), 1692-1696, 2007
1042007
COFACTOR: improved protein function prediction by combining structure, sequence and protein–protein interaction information
C Zhang, PL Freddolino, Y Zhang
Nucleic acids research 45 (W1), W291-W299, 2017
892017
The role of molecular modeling in bionanotechnology
D Lu, A Aksimentiev, AY Shih, E Cruz-Chu, PL Freddolino, A Arkhipov, ...
Physical Biology 3 (1), S40, 2006
882006
A vulnerability in popular molecular dynamics packages concerning Langevin and Andersen dynamics
DS Cerutti, R Duke, PL Freddolino, H Fan, TP Lybrand
Journal of chemical theory and computation 4 (10), 1669-1680, 2008
762008
The system can't perform the operation now. Try again later.
Articles 1–20