Serkan Erdin
Serkan Erdin
Director of Bioinformatics, Massachusetts General Hospital, Harvard Medical School
Verified email at
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TFEB links autophagy to lysosomal biogenesis
C Settembre, C Di Malta, VA Polito, MG Arencibia, F Vetrini, S Erdin, ...
science 332 (6036), 1429-1433, 2011
A lysosome‐to‐nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB
C Settembre, R Zoncu, DL Medina, F Vetrini, S Erdin, SU Erdin, T Huynh, ...
The EMBO journal 31 (5), 1095-1108, 2012
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing
A Veres, BS Gosis, Q Ding, R Collins, A Ragavendran, H Brand, S Erdin, ...
Cell stem cell 15 (1), 27-30, 2014
CHD8 regulates neurodevelopmental pathways associated with autism spectrum disorder in neural progenitors
A Sugathan, M Biagioli, C Golzio, S Erdin, I Blumenthal, P Manavalan, ...
Proceedings of the National Academy of Sciences 111 (42), E4468-E4477, 2014
Genes that affect brain structure and function identified by rare variant analyses of Mendelian neurologic disease
E Karaca, T Harel, D Pehlivan, SN Jhangiani, T Gambin, ZC Akdemir, ...
Neuron 88 (3), 499-513, 2015
Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function
E Karaca, S Weitzer, D Pehlivan, H Shiraishi, T Gogakos, T Hanada, ...
Cell 157 (3), 636-650, 2014
Recurrent de novo and biallelic variation of ATAD3A, encoding a mitochondrial membrane protein, results in distinct neurological syndromes
T Harel, WH Yoon, C Garone, S Gu, Z Coban-Akdemir, MK Eldomery, ...
The American Journal of Human Genetics 99 (4), 831-845, 2016
SMCHD1 mutations associated with a rare muscular dystrophy can also cause isolated arhinia and Bosma arhinia microphthalmia syndrome
ND Shaw, H Brand, ZA Kupchinsky, H Bengani, L Plummer, TI Jones, ...
Nature genetics 49 (2), 238-248, 2017
Transcriptional consequences of 16p11. 2 deletion and duplication in mouse cortex and multiplex autism families
I Blumenthal, A Ragavendran, S Erdin, L Klei, A Sugathan, JR Guide, ...
The American Journal of Human Genetics 94 (6), 870-883, 2014
NetWalker: a contextual network analysis tool for functional genomics
K Komurov, S Dursun, S Erdin, PT Ram
BMC genomics 13, 1-9, 2012
Topological textures in a ferromagnet-superconductor bilayer
S Erdin, IF Lyuksyutov, VL Pokrovsky, VM Vinokur
Physical review letters 88 (1), 017001, 2001
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
DM Kristensen, RM Ward, AM Lisewski, S Erdin, BY Chen, VY Fofanov, ...
BMC bioinformatics 9, 1-19, 2008
Engineering microdeletions and microduplications by targeting segmental duplications with CRISPR
DJC Tai, A Ragavendran, P Manavalan, A Stortchevoi, CM Seabra, ...
Nature neuroscience 19 (3), 517-522, 2016
Interaction of mesoscopic magnetic textures with superconductors
S Erdin, AF Kayali, IF Lyuksyutov, VL Pokrovsky
Physical Review B 66 (1), 014414, 2002
Whole-Exome Sequencing Identifies Homozygous GPR161 Mutation in a Family with Pituitary Stalk Interruption Syndrome
E Karaca, R Buyukkaya, D Pehlivan, WL Charng, KO Yaykasli, Y Bayram, ...
The Journal of Clinical Endocrinology & Metabolism 100 (1), E140-E147, 2015
Evolutionary trace for prediction and redesign of protein functional sites
A Wilkins, S Erdin, R Lua, O Lichtarge
Computational Drug Discovery and Design, 29-42, 2012
Modeling the structure and electronic properties of nanoparticles
AS Barnard, S Erdin, Y Lin, P Zapol, JW Halley
Physical Review B—Condensed Matter and Materials Physics 73 (20), 205405, 2006
Htt CAG repeat expansion confers pleiotropic gains of mutant huntingtin function in chromatin regulation
M Biagioli, F Ferrari, EM Mendenhall, Y Zhang, S Erdin, R Vijayvargia, ...
Human molecular genetics 24 (9), 2442-2457, 2015
Protein function prediction: towards integration of similarity metrics
S Erdin, AM Lisewski, O Lichtarge
Current opinion in structural biology 21 (2), 180-188, 2011
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