Interplay of somatic alterations and immune infiltration modulates response to PD-1 blockade in advanced clear cell renal cell carcinoma DA Braun, Y Hou, Z Bakouny, M Ficial, M Sant’Angelo, J Forman, ... Nature medicine 26 (6), 909-918, 2020 | 590 | 2020 |
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ... Cell 183 (3), 818-834. e13, 2020 | 345 | 2020 |
Assembly of a pan-genome from deep sequencing of 910 humans of African descent RM Sherman, J Forman, V Antonescu, D Puiu, M Daya, N Rafaels, ... Nature genetics 51 (1), 30-35, 2019 | 337 | 2019 |
Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma Z Hu, DE Leet, RL Allesøe, G Oliveira, S Li, AM Luoma, J Liu, J Forman, ... Nature medicine 27 (3), 515-525, 2021 | 317 | 2021 |
Phenotype, specificity and avidity of antitumour CD8+ T cells in melanoma G Oliveira, K Stromhaug, S Klaeger, T Kula, DT Frederick, PM Le, ... Nature 596 (7870), 119-125, 2021 | 289 | 2021 |
Progressive immune dysfunction with advancing disease stage in renal cell carcinoma DA Braun, K Street, KP Burke, DL Cookmeyer, T Denize, CB Pedersen, ... Cancer Cell 39 (5), 632-648. e8, 2021 | 268 | 2021 |
Quiescent cancer cells resist T cell attack by forming an immunosuppressive niche P Baldominos, A Barbera-Mourelle, O Barreiro, Y Huang, A Wight, ... Cell 185 (10), 1694-1708. e19, 2022 | 122 | 2022 |
Integrative molecular characterization of sarcomatoid and rhabdoid renal cell carcinoma Z Bakouny, DA Braun, SA Shukla, W Pan, X Gao, Y Hou, A Flaifel, S Tang, ... Nature communications 12 (1), 808, 2021 | 100 | 2021 |
RNase H–dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis S Li, J Sun, R Allesøe, K Datta, Y Bao, G Oliveira, J Forman, R Jin, ... Nature protocols 14 (8), 2571-2594, 2019 | 34 | 2019 |
Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect P Bachireddy, C Ennis, VN Nguyen, SH Gohil, K Clement, SA Shukla, ... Science translational medicine 12 (561), eabb7661, 2020 | 16 | 2020 |
DTL-RnB: Algorithms and tools for summarizing the space of DTL reconciliations W Ma, D Smirnov, J Forman, A Schweickart, C Slocum, S Srinivasan, ... IEEE/ACM transactions on computational biology and bioinformatics 15 (2 …, 2016 | 16 | 2016 |
xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria EC Bush, AE Clark, CA DeRanek, A Eng, J Forman, K Heath, AB Lee, ... BMC bioinformatics 19, 1-11, 2018 | 14 | 2018 |
Modeling clonal structure over narrow time frames via circulating tumor DNA in metastatic breast cancer ZT Weber, KA Collier, D Tallman, J Forman, S Shukla, S Asad, J Rhoades, ... Genome medicine 13 (1), 89, 2021 | 11 | 2021 |
Multidimensional molecular profiling of metastatic triple-negative breast cancer and immune checkpoint inhibitor benefit R Barroso-Sousa, J Forman, K Collier, ZT Weber, TR Jammihal, KZ Kao, ... JCO Precision Oncology 6, e2100413, 2022 | 9 | 2022 |
Integrative Molecular Characterization of Sarcomatoid and Rhabdoid Renal Cell Carcinoma Reveals Determinants of Poor Prognosis and Response to Immune Checkpoint Inhibitors Z Bakouny, DA Braun, SA Shukla, W Pan, X Gao, Y Hou, A Flaifel, S Tang, ... bioRxiv, 2020.05. 28.121806, 2020 | 4 | 2020 |
Abstract PD9-08: modeling clonal structure over narrow time frames via circulating tumor DNA in metastatic breast cancer DG Stover, KA Collier, D Tallman, J Forman, S Shukla, S Asad, ... Cancer Research 81 (4_Supplement), PD9-08-PD9-08, 2021 | 1 | 2021 |
Abstract PS4-25: Comprehensive genomic analysis reveals molecular correlates of response to immune checkpoint inhibitors (ICI) in metastatic triple-negative breast cancer (mTNBC) R Barroso-Sousa, J Forman, ZT Weber, K Collier, KZ Kao, ... Cancer Research 81 (4_Supplement), PS4-25-PS4-25, 2021 | | 2021 |
Comprehensive genomic analysis reveals molecular correlates of response to immune checkpoint inhibitors (ICI) in metastatic triple-negative breast cancer (mTNBC) R Barroso-Sousa, J Forman, ZT Weber, K Collier, KZ Kao, ... CANCER RESEARCH 81 (4), 2021 | | 2021 |
Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to graft-versus-leukemia P Bachireddy, C Ennis, VN Nguyen, K Clement, SH Gohil, SA Shukla, ... bioRxiv, 2020.04. 09.033555, 2020 | | 2020 |