Joan Carles Pons

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Gabriel CardonaFull Professor. Dept. of Mathematics and Computer Science, University of the Balearic IslandsVerified email at uib.es
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Mercè LlabrésUniversitat de les Illes BalearsVerified email at uib.es
Celine ScornavaccaInstitut des Sciences de l'Evolution, MontpellierVerified email at umontpellier.fr
Kristina WickeAssistant Professor, New Jersey Institute of TechnologyVerified email at njit.edu
Laura KubatkoProfessor, The Ohio State UniversityVerified email at stat.osu.edu
Tomás Martínez CoronadoProfesor Titular Laboral, Universitat de les Illes BalearsVerified email at uib.eu
Prof. Mike SteelUniversity of Canterbury, New ZealandVerified email at canterbury.ac.nz
Charles SempleProfessor of Mathematics, University of CanterburyVerified email at canterbury.ac.nz
Andrew FrancisSchool of Mathematics and Statistics, University of New South Wales, Sydney, AustraliaVerified email at unsw.edu.au
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Yukihiro MurakamiAssistant Professor, TU DelftVerified email at tudelft.nl

Joan Carles Pons

Associate professor, Balearic Islands University

Verified email at uib.es

Phylogenetic networks Combinatorics Bioinformatics Virus classification


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IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 47 (D1), D678-D686, 2018	180	2018
VPF-Class: Taxonomic assignment and host prediction of uncultivated viruses based on viral protein families JC Pons, D Paez-Espino, G Riera, N Ivanova, NC Kyrpides, M Llabrés Bioinformatics, 2021	97	2021
Classes of explicit phylogenetic networks and their biological and mathematical significance S Kong, JC Pons, L Kubatko, K Wicke Journal of Mathematical Biology 84 (6), 1-44, 2022	58	2022
Tree-based networks: characterisations, metrics, and support trees JC Pons, C Semple, M Steel Journal of mathematical biology, 1-20, 2018	27	2018
A reconstruction problem for a class of phylogenetic networks with lateral gene transfers G Cardona, JC Pons, F Rosselló Algorithms for Molecular Biology 10 (1), 28, 2015	17	2015
Generation of Binary Tree-Child phylogenetic networks G Cardona, JC Pons, C Scornavacca PLoS computational biology 15 (9), e1007347, 2019	15	2019
Fast algorithm for the reconciliation of gene trees and LGT networks C Scornavacca, JCP Mayol, G Cardona Journal of theoretical biology 418, 129-137, 2017	14	2017
Generation of level-k LGT Networks JC Pons, C Scornavacca, G Cardona IEEE/ACM transactions on computational biology and bioinformatics, 2019	10	2019
Comparison of orchard networks using their extended μ-representation G Cardona, JC Pons, G Ribas, TM Coronado IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2024	8	2024
A polynomial invariant for a new class of phylogenetic networks JC Pons, TM Coronado, M Hendriksen, A Francis PloS one 17 (5), e0268181, 2022	7	2022
Reconstruction of LGT networks from tri-LGT-nets G Cardona, JC Pons Journal of Mathematical Biology, 1-24, 2017	2	2017
Counting Cherry Reduction Sequences in Phylogenetic Tree-Child Networks is Counting Linear Extensions TM Coronado, JC Pons, G Riera Bulletin of Mathematical Biology 86 (12), 146, 2024	1*	2024
Generation of orchard and tree-child networks G Cardona, G Ribas, JC Pons Bulletin of Mathematical Biology 86 (1), 10, 2024	1	2024
Fence decompositions and cherry covers in non-binary phylogenetic networks JC Pons, PV López, Y Murakami, L Van Iersel arXiv preprint arXiv:2407.08812, 2024		2024

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