Dagmar Waltemath

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Coautores

David Phillip NickersonAuckland Bioengineering Institute, University of AucklandDirección de correo verificada de auckland.ac.nz
Michael HuckaCalifornia Institute of TechnologyDirección de correo verificada de caltech.edu
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyDirección de correo verificada de caltech.edu
Ron HenkelHeidelberg Institute for Theoretical StudiesDirección de correo verificada de uni-rostock.de
Martin GolebiewskiHITS gGmbH, Heidelberg (Germany)Dirección de correo verificada de h-its.org
Chris MyersUniversity of UtahDirección de correo verificada de ece.utah.edu
Martin ScharmHead of IT @ Dept. of Systems Biology and BioinformaticsDirección de correo verificada de binfalse.de
Brett G. OlivierVU AmsterdamDirección de correo verificada de vu.nl
Jonathan CooperUniversity College LondonDirección de correo verificada de ucl.ac.uk
Falk SchreiberProfessor, University of Konstanz and Monash UniversityDirección de correo verificada de uni-konstanz.de
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamDirección de correo verificada de sun.ac.za
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaDirección de correo verificada de virginia.edu
Nicolas RodriguezSenior Software Systems and Database Architect, Babraham InstituteDirección de correo verificada de babraham.ac.uk
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoDirección de correo verificada de utoronto.ca
Andreas DrägerJunior Professor for Computational Systems Biology of Infection and Antimicrobial-ResistanceDirección de correo verificada de informatik.uni-tuebingen.de
Herbert M SauroUniversity of WashingtonDirección de correo verificada de u.washington.edu
Darren WilkinsonProfessor of Stochastic Modelling, Newcastle University, U.K.Dirección de correo verificada de ncl.ac.uk
Stian Soiland-ReyesTechnical Architect, School of Computer Science, University of ManchesterDirección de correo verificada de manchester.ac.uk
Padraig GleesonDepartment of Neuroscience, Physiology and Pharmacology, University College LondonDirección de correo verificada de ucl.ac.uk
Claudine ChaouiyaI2M UMR 7373, Aix-Marseille University (France) & Instituto Gulbenkian de Ciência (Portugal)Dirección de correo verificada de igc.gulbenkian.pt

Dagmar Waltemath

Professor of Medical Informatics

Dirección de correo verificada de uni-greifswald.de - Página principal

biomedical research data management data integration


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011	255	2011
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5 (1), 1-10, 2011	219	2011
Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011	131	2011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 1-9, 2014	82	2014
SED-ML–An XML Format for the Implementation of the MIASE Guidelines D Köhn, N Le Novère International Conference on Computational Methods in Systems Biology, 176-190, 2008	67	2008
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in bioengineering and biotechnology 3, 19, 2015	54	2015
A call for virtual experiments: accelerating the scientific process J Cooper, JO Vik, D Waltemath Progress in biophysics and molecular biology 117 (1), 99-106, 2015	53	2015
Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016	43	2016
How modeling standards, software, and initiatives support reproducibility in systems biology and systems medicine D Waltemath, O Wolkenhauer IEEE Transactions on Biomedical Engineering 63 (10), 1999-2006, 2016	43	2016
Combining computational models, semantic annotations and simulation experiments in a graph database R Henkel, O Wolkenhauer, D Waltemath Database 2015, 2015	41	2015
Ranked retrieval of computational biology models R Henkel, L Endler, A Peters, N Le Novère, D Waltemath BMC bioinformatics 11 (1), 1-12, 2010	39	2010
The systems biology markup language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 2018	38	2018
Improving the reuse of computational models through version control D Waltemath, R Henkel, R Hälke, M Scharm, O Wolkenhauer Bioinformatics 29 (6), 742-748, 2013	33	2013
Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019	25	2019
Meeting report from the fourth meeting of the computational modeling in biology network (COMBINE) D Waltemath, FT Bergmann, C Chaouiya, T Czauderna, P Gleeson, ... Standards in genomic sciences 9 (3), 1285-1301, 2014	25	2014
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 2019	23	2019
An algorithm to detect and communicate the differences in computational models describing biological systems M Scharm, O Wolkenhauer, D Waltemath Bioinformatics 32 (4), 563-570, 2016	23	2016
Specifications of standards in systems and synthetic biology F Schreiber, GD Bader, M Golebiewski, M Hucka, B Kormeier, ... Journal of integrative bioinformatics 12 (2), 1-3, 2015	19	2015
Simulation experiment description markup language (SED-ML) Level 1 Version 2 FT Bergmann, J Cooper, N Le Novere, D Nickerson, D Waltemath Journal of integrative bioinformatics 12 (2), 119-212, 2015	17	2015
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020	16	2020

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