| Comprehensive benchmarking and ensemble approaches for metagenomic classifiers ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ... Genome biology 18, 1-19, 2017 | 303 | 2017 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 236* | 2021 |
| Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ... Nature communications 12 (1), 1660, 2021 | 224* | 2021 |
| A synthesis of bacterial and archaeal phenotypic trait data JS Madin, DA Nielsen, M Brbic, R Corkrey, D Danko, K Edwards, ... Scientific data 7 (1), 170, 2020 | 66 | 2020 |
| Entropy-scaling search of massive biological data YW Yu, NM Daniels, DC Danko, B Berger Cell systems 1 (2), 130-140, 2015 | 61 | 2015 |
| The microbiomes of seven lichen genera reveal host specificity, a reduced core community and potential as source of antimicrobials MA Sierra, DC Danko, TA Sandoval, G Pishchany, B Moncada, R Kolter, ... Frontiers in microbiology 11, 512755, 2020 | 49 | 2020 |
| Characterization of the public transit air microbiome and resistome reveals geographical specificity MHY Leung, X Tong, KO Bøifot, D Bezdan, DJ Butler, DC Danko, J Gohli, ... Microbiome 9 (1), 112, 2021 | 37 | 2021 |
| System-wide transcriptome damage and tissue identity loss in COVID-19 patients J Park, J Foox, T Hether, DC Danko, S Warren, Y Kim, J Reeves, DJ Butler, ... Cell Reports Medicine 3 (2), 2022 | 36* | 2022 |
| Minerva: an alignment-and reference-free approach to deconvolve linked-reads for metagenomics DC Danko, D Meleshko, D Bezdan, C Mason, I Hajirasouliha Genome research 29 (1), 116-124, 2019 | 33 | 2019 |
| Illuminating genetic mysteries of the dead sea scrolls S Anava, M Neuhof, H Gingold, O Sagy, A Munters, EM Svensson, ... Cell 181 (6), 1218-1231. e27, 2020 | 24 | 2020 |
| The Microbe Directory: An annotated, searchable inventory of microbes’ characteristics CEM Heba Shaaban, David A. Westfall, Rawhi Mohammad, David Danko, Daniela ... Gates Open Research, 2018 | 20 | 2018 |
| Sequencing of circulating microbial cell-free DNA can identify pathogens in periprosthetic joint infections AP Echeverria, IS Cohn, DC Danko, S Shanaj, L Blair, D Hollemon, ... JBJS 103 (18), 1705-1712, 2021 | 19 | 2021 |
| Epsilon toxin–producing Clostridium perfringens colonize the multiple sclerosis gut microbiome overcoming CNS immune privilege Y Ma, D Sannino, JR Linden, S Haigh, B Zhao, JB Grigg, P Zumbo, ... The Journal of clinical investigation 133 (9), 2023 | 17* | 2023 |
| A comprehensive metagenomics framework to characterize organisms relevant for planetary protection DC Danko, MA Sierra, JN Benardini, L Guan, JM Wood, N Singh, ... Microbiome 9, 1-15, 2021 | 17 | 2021 |
| Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps J Park, J Foox, T Hether, D Danko, S Warren, Y Kim, J Reeves, DJ Butler, ... bioRxiv, 2021.03. 08.434433, 2021 | 13 | 2021 |
| Obesity and ethnicity alter gene expression in skin JM Walker, S Garcet, JO Aleman, CE Mason, D Danko, D Butler, S Zuffa, ... Scientific reports 10 (1), 14079, 2020 | 13 | 2020 |
| The microbe directory v2. 0: An expanded database of ecological and phenotypical features of microbes MA Sierra, C Bhattacharya, K Ryon, S Meierovich, H Shaaban, D Westfall, ... BioRxiv, 2019.12. 20.860569, 2019 | 11 | 2019 |
| Metagenomic characterization of bacterial community and antibiotic resistance genes found in the mass transit system in Seoul, South Korea RB Guevarra, J Hwang, H Lee, HJ Kim, Y Lee, D Danko, KA Ryon, ... Ecotoxicology and Environmental Safety 246, 114176, 2022 | 7 | 2022 |
| Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association J Wu, D Danko, E Afshinnekoo, D Bezdan, M Bhattacharyya, ... Environmental Research 207, 112183, 2022 | 7 | 2022 |
| Characterization of spacesuit associated microbial communities and their implications for NASA missions D Danko, GB Malli Mohan, MA Sierra, M Rucker, NK Singh, AB Regberg, ... Frontiers in Microbiology 12, 608478, 2021 | 7 | 2021 |
Christopher MasonProfessor of Genomics, Physiology, & Biophysics, Weill Cornell MedicineVerified email at med.cornell.edu
