| Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome G Guilbaud, A Rappailles, A Baker, CL Chen, A Arneodo, A Goldar, ... PLoS computational biology 7 (12), e1002322, 2011 | 145 | 2011 |
| 3D chromatin conformation correlates with replication timing and is conserved in resting cells B Moindrot, B Audit, P Klous, A Baker, C Thermes, W de Laat, P Bouvet, ... Nucleic acids research 40 (19), 9470-9481, 2012 | 82 | 2012 |
| Replication-associated mutational asymmetry in the human genome CL Chen, L Duquenne, B Audit, G Guilbaud, A Rappailles, A Baker, ... Molecular biology and evolution 28 (8), 2327-2337, 2011 | 76 | 2011 |
| Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines A Baker, B Audit, CL Chen, B Moindrot, A Leleu, G Guilbaud, A Rappailles, ... PLoS computational biology 8 (4), e1002443, 2012 | 75 | 2012 |
| Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm B Audit, A Baker, CL Chen, A Rappailles, G Guilbaud, H Julienne, ... Nature protocols 8 (1), 98-110, 2013 | 54 | 2013 |
| From simple bacterial and archaeal replicons to replication N/U-domains O Hyrien, A Rappailles, G Guilbaud, A Baker, CL Chen, A Goldar, ... Journal of molecular biology 425 (23), 4673-4689, 2013 | 41 | 2013 |
| Inferring where and when replication initiates from genome-wide replication timing data A Baker, B Audit, SCH Yang, J Bechhoefer, A Arneodo Physical review letters 108 (26), 268101, 2012 | 30 | 2012 |
| Wavelet-based method to disentangle transcription-and replication-associated strand asymmetries in mammalian genomes A Baker, S Nicolay, L Zaghloul, Y d'Aubenton-Carafa, C Thermes, B Audit, ... Applied and Computational Harmonic Analysis 28 (2), 150-170, 2010 | 30 | 2010 |
| Linking the DNA strand asymmetry to the spatio-temporal replication program A Baker, H Julienne, CL Chen, B Audit, Y d’Aubenton-Carafa, C Thermes, ... The European Physical Journal E 35 (9), 1-25, 2012 | 21* | 2012 |
| Exact asymptotics for phase retrieval and compressed sensing with random generative priors B Aubin, B Loureiro, A Baker, F Krzakala, L Zdeborová Mathematical and Scientific Machine Learning, 55-73, 2020 | 20 | 2020 |
| Gene organization inside replication domains in mammalian genomes L Zaghloul, A Baker, B Audit, A Arneodo Comptes Rendus Mécanique 340 (11-12), 745-757, 2012 | 19 | 2012 |
| Megabase replication domains along the human genome: relation to chromatin structure and genome organisation B Audit, L Zaghloul, A Baker, A Arneodo, CL Chen, Y d’Aubenton-Carafa, ... Epigenetics: Development and Disease, 57-80, 2013 | 18 | 2013 |
| From the chromatin interaction network to the organization of the human genome into replication N/U-domains RE Boulos, H Julienne, A Baker, CL Chen, N Petryk, M Kahli, A Goldar, ... New Journal of Physics 16 (11), 115014, 2014 | 12 | 2014 |
| On the universality of noiseless linear estimation with respect to the measurement matrix A Abbara, A Baker, F Krzakala, L Zdeborová Journal of Physics A: Mathematical and Theoretical 53 (16), 164001, 2020 | 8 | 2020 |
| Inferring the spatiotemporal DNA replication program from noisy data A Baker, J Bechhoefer Physical Review E 89 (3), 032703, 2014 | 8 | 2014 |
| Epidemic mitigation by statistical inference from contact tracing data A Baker, I Biazzo, A Braunstein, G Catania, L Dall’Asta, A Ingrosso, ... Proceedings of the National Academy of Sciences 118 (32), e2106548118, 2021 | 7 | 2021 |
| Tramp: Compositional inference with tree approximate message passing A Baker, B Aubin, F Krzakala, L Zdeborová arXiv preprint arXiv:2004.01571, 2020 | 5 | 2020 |
| Linking the DNA strand asymmetry to the spatio-temporal replication program: from theory to the analysis of genomic and epigenetic data A Baker Ecole normale supérieure de lyon-ENS LYON, 2011 | 4 | 2011 |
| Relating mammalian replication program to large-scale chromatin folding B Audit, A Baker, RE Boulos, H Julienne, A Arneodo, CL Chen, ... Proceedings of the International Conference on Bioinformatics, Computational …, 2013 | 1 | 2013 |
| SiMCa: Sinkhorn Matrix Factorization with Capacity Constraints E Daoud, L Ganassali, A Baker, M Lelarge arXiv preprint arXiv:2203.10107, 2022 | | 2022 |
