Antoine Baker
Antoine Baker
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Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome
G Guilbaud, A Rappailles, A Baker, CL Chen, A Arneodo, A Goldar, ...
PLoS computational biology 7 (12), e1002322, 2011
3D chromatin conformation correlates with replication timing and is conserved in resting cells
B Moindrot, B Audit, P Klous, A Baker, C Thermes, W de Laat, P Bouvet, ...
Nucleic acids research 40 (19), 9470-9481, 2012
Replication-associated mutational asymmetry in the human genome
CL Chen, L Duquenne, B Audit, G Guilbaud, A Rappailles, A Baker, ...
Molecular biology and evolution 28 (8), 2327-2337, 2011
Replication fork polarity gradients revealed by megabase-sized U-shaped replication timing domains in human cell lines
A Baker, B Audit, CL Chen, B Moindrot, A Leleu, G Guilbaud, A Rappailles, ...
PLoS computational biology 8 (4), e1002443, 2012
Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm
B Audit, A Baker, CL Chen, A Rappailles, G Guilbaud, H Julienne, ...
Nature protocols 8 (1), 98-110, 2013
From simple bacterial and archaeal replicons to replication N/U-domains
O Hyrien, A Rappailles, G Guilbaud, A Baker, CL Chen, A Goldar, ...
Journal of molecular biology 425 (23), 4673-4689, 2013
Inferring where and when replication initiates from genome-wide replication timing data
A Baker, B Audit, SCH Yang, J Bechhoefer, A Arneodo
Physical review letters 108 (26), 268101, 2012
Wavelet-based method to disentangle transcription-and replication-associated strand asymmetries in mammalian genomes
A Baker, S Nicolay, L Zaghloul, Y d'Aubenton-Carafa, C Thermes, B Audit, ...
Applied and Computational Harmonic Analysis 28 (2), 150-170, 2010
Linking the DNA strand asymmetry to the spatio-temporal replication program
A Baker, H Julienne, CL Chen, B Audit, Y d’Aubenton-Carafa, C Thermes, ...
The European Physical Journal E 35 (9), 1-25, 2012
Exact asymptotics for phase retrieval and compressed sensing with random generative priors
B Aubin, B Loureiro, A Baker, F Krzakala, L Zdeborová
Mathematical and Scientific Machine Learning, 55-73, 2020
Gene organization inside replication domains in mammalian genomes
L Zaghloul, A Baker, B Audit, A Arneodo
Comptes Rendus Mécanique 340 (11-12), 745-757, 2012
Megabase replication domains along the human genome: relation to chromatin structure and genome organisation
B Audit, L Zaghloul, A Baker, A Arneodo, CL Chen, Y d’Aubenton-Carafa, ...
Epigenetics: Development and Disease, 57-80, 2013
From the chromatin interaction network to the organization of the human genome into replication N/U-domains
RE Boulos, H Julienne, A Baker, CL Chen, N Petryk, M Kahli, A Goldar, ...
New Journal of Physics 16 (11), 115014, 2014
On the universality of noiseless linear estimation with respect to the measurement matrix
A Abbara, A Baker, F Krzakala, L Zdeborová
Journal of Physics A: Mathematical and Theoretical 53 (16), 164001, 2020
Inferring the spatiotemporal DNA replication program from noisy data
A Baker, J Bechhoefer
Physical Review E 89 (3), 032703, 2014
Epidemic mitigation by statistical inference from contact tracing data
A Baker, I Biazzo, A Braunstein, G Catania, L Dall’Asta, A Ingrosso, ...
Proceedings of the National Academy of Sciences 118 (32), e2106548118, 2021
Tramp: Compositional inference with tree approximate message passing
A Baker, B Aubin, F Krzakala, L Zdeborová
arXiv preprint arXiv:2004.01571, 2020
Linking the DNA strand asymmetry to the spatio-temporal replication program: from theory to the analysis of genomic and epigenetic data
A Baker
Ecole normale supérieure de lyon-ENS LYON, 2011
Relating mammalian replication program to large-scale chromatin folding
B Audit, A Baker, RE Boulos, H Julienne, A Arneodo, CL Chen, ...
Proceedings of the International Conference on Bioinformatics, Computational …, 2013
SiMCa: Sinkhorn Matrix Factorization with Capacity Constraints
E Daoud, L Ganassali, A Baker, M Lelarge
arXiv preprint arXiv:2203.10107, 2022
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Artículos 1–20