Bruno Contreras-Moreira
Bruno Contreras-Moreira
EMBL-EBI Ensembl Plants
Verified email at ebi.ac.uk - Homepage
TitleCited byYear
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ...
Nucleic acids research 36 (suppl_1), D120-D124, 2008
5622008
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis
B Contreras-Moreira, P Vinuesa
Appl. Environ. Microbiol. 79 (24), 7696-7701, 2013
2992013
Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli
A Mendoza-Vargas, L Olvera, M Olvera, R Grande, L Vega-Alvarado, ...
PLoS One 4 (10), e7526, 2009
2252009
OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer
GC Sellar, KP Watt, GJ Rabiasz, EA Stronach, L Li, EP Miller, CE Massie, ...
Nature genetics 34 (3), 337, 2003
2052003
Domain fishing: a first step in protein comparative modelling
B Contreras-Moreira, PA Bates
Bioinformatics 18 (8), 1141-1142, 2002
2032002
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
1932015
Multilocus sequence analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the Asiatic continent
P Vinuesa, K Rojas-Jiménez, B Contreras-Moreira, SK Mahna, BN Prasad, ...
Appl. Environ. Microbiol. 74 (22), 6987-6996, 2008
1732008
3D-footprint: a database for the structural analysis of protein–DNA complexes
B Contreras-Moreira
Nucleic acids research 38 (suppl_1), D91-D97, 2009
592009
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
SP Gordon, B Contreras-Moreira, DP Woods, DL Des Marais, D Burgess, ...
Nature communications 8 (1), 2184, 2017
552017
In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling
B Contreras-Moreira, PW Fitzjohn, PA Bates
Journal of molecular biology 328 (3), 593-608, 2003
532003
BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley
CP Cantalapiedra, R Boudiar, AM Casas, E Igartua, B Contreras-Moreira
Molecular breeding 35 (1), 13, 2015
502015
Prediction of TF target sites based on atomistic models of protein-DNA complexes
VE Angarica, AG Pérez, AT Vasconcelos, J Collado-Vides, ...
BMC bioinformatics 9 (1), 436, 2008
492008
The role of DNA-binding specificity in the evolution of bacterial regulatory networks
I Lozada-Chávez, VE Angarica, J Collado-Vides, B Contreras-Moreira
Journal of molecular biology 379 (3), 627, 2008
472008
HvFT1 (VrnH3) drives latitudinal adaptation in Spanish barleys
AM Casas, A Djemel, S Yahiaoui, LJ Ponce, B Contreras-Moreira, ...
Theoretical and applied genetics 122 (7), 1293-1304, 2011
362011
Novel use of a genetic algorithm for protein structure prediction: searching template and sequence alignment space
B Contreras‐Moreira, PW Fitzjohn, M Offman, GR Smith, PA Bates
Proteins: Structure, Function, and Bioinformatics 53 (S6), 424-429, 2003
352003
Comparative modelling: an essential methodology for protein structure prediction in the post-genomic era.
B Contreras-Moreira, PW Fitzjohn, PA Bates
Applied bioinformatics 1 (4), 177-190, 2002
352002
footprintDB: a database of transcription factors with annotated cis elements and binding interfaces
A Sebastian, B Contreras-Moreira
Bioinformatics 30 (2), 258-265, 2013
342013
Functional recycling of C2 domains throughout evolution: a comparative study of synaptotagmin, protein kinase C and phospholipase C by sequence, structural and modelling approaches
JL Jiménez, GR Smith, B Contreras-Moreira, JG Sgouros, FA Meunier, ...
Journal of molecular biology 333 (3), 621-639, 2003
342003
OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors
TS Serra, DD Figueiredo, AM Cordeiro, DM Almeida, T Lourenço, ...
Plant Molecular Biology 82 (4-5), 439-455, 2013
332013
primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies
B Contreras-Moreira, B Sachman-Ruiz, I Figueroa-Palacios, P Vinuesa
Nucleic acids research 37 (suppl_2), W95-W100, 2009
322009
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