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Lassi Paavolainen
Lassi Paavolainen
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Verified email at fimm.fi
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Cited by
Cited by
Year
Data-analysis strategies for image-based cell profiling
JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu, C Molnar, ...
Nature methods 14 (9), 849-863, 2017
4162017
BioImageXD: an open, general-purpose and high-throughput image-processing platform
P Kankaanpää, L Paavolainen, S Tiitta, M Karjalainen, J Päivärinne, ...
Nature methods 9 (7), 683-689, 2012
2222012
nucleAIzer: a parameter-free deep learning framework for nucleus segmentation using image style transfer
R Hollandi, A Szkalisity, T Toth, E Tasnadi, C Molnar, B Mathe, I Grexa, ...
Cell Systems 10 (5), 453-458. e6, 2020
121*2020
Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis
S Blom, L Paavolainen, D Bychkov, R Turkki, P Mäki-Teeri, A Hemmes, ...
Scientific reports 7 (1), 1-13, 2017
1202017
Association of tamoxifen resistance and lipid reprogramming in breast cancer
S Hultsch, M Kankainen, L Paavolainen, RM Kovanen, E Ikonen, ...
BMC cancer 18 (1), 1-14, 2018
972018
Comprehensive drug testing of patient-derived conditionally reprogrammed cells from castration-resistant prostate cancer
K Saeed, V Rahkama, S Eldfors, D Bychkov, JP Mpindi, B Yadav, ...
European urology 71 (3), 319-327, 2017
752017
ADC measurements in diffuse large B-cell lymphoma and follicular lymphoma: a DWI and cellularity study
X Wu, H Pertovaara, P Dastidar, M Vornanen, L Paavolainen, ...
European journal of radiology 82 (4), e158-e164, 2013
702013
Advanced cell classifier: user-friendly machine-learning-based software for discovering phenotypes in high-content imaging data
F Piccinini, T Balassa, A Szkalisity, C Molnar, L Paavolainen, K Kujala, ...
Cell systems 4 (6), 651-655. e5, 2017
632017
Intelligent image-based in situ single-cell isolation
C Brasko, K Smith, C Molnar, N Farago, L Hegedus, A Balind, T Balassa, ...
Nature communications 9 (1), 1-7, 2018
592018
N-and O-methylation of sphingomyelin markedly affects its membrane properties and interactions with cholesterol
A Björkbom, T Róg, P Kankaanpää, D Lindroos, K Kaszuba, M Kurita, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1808 (4), 1179-1186, 2011
402011
Calpains promote α2β1 integrin turnover in nonrecycling integrin pathway
N Rintanen, M Karjalainen, J Alanko, L Paavolainen, A Mäki, L Nissinen, ...
Molecular biology of the cell 23 (3), 448-463, 2012
392012
Compensation of missing wedge effects with sequential statistical reconstruction in electron tomography
L Paavolainen, E Acar, U Tuna, S Peltonen, T Moriya, P Soonsawad, ...
PLoS One 9 (10), e108978, 2014
312014
A functional genetic screen defines the AKT-induced senescence signaling network
KT Chan, S Blake, H Zhu, J Kang, AS Trigos, PB Madhamshettiwar, ...
Cell Death & Differentiation 27 (2), 725-741, 2020
292020
UNC-45a promotes myosin folding and stress fiber assembly
JI Lehtimäki, AM Fenix, TM Kotila, G Balistreri, L Paavolainen, ...
Journal of Cell Biology 216 (12), 4053-4072, 2017
292017
Automatic detection and analysis of cell motility in phase‐contrast time‐lapse images using a combination of maximally stable extremal regions and Kalman filter approaches
M Kaakinen, S Huttunen, L Paavolainen, V Marjomäki, J Heikkilä, ...
Journal of Microscopy 253 (1), 65-78, 2014
282014
BIAFLOWS: A collaborative framework to reproducibly deploy and benchmark bioimage analysis workflows
U Rubens, R Mormont, L Paavolainen, V Bäcker, B Pavie, LA Scholz, ...
Patterns 1 (3), 100040, 2020
18*2020
Trimeric HIV Env provides epitope occlusion mediated by hypervariable loops
CG Moscoso, L Xing, J Hui, J Hu, MB Kalkhoran, OM Yenigun, Y Sun, ...
Scientific reports 4 (1), 1-9, 2014
132014
Permeability changes of integrin-containing multivesicular structures triggered by picornavirus entry
P Soonsawad, L Paavolainen, P Upla, W Weerachatyanukul, N Rintanen, ...
PloS one 9 (10), e108948, 2014
122014
Application independent greedy particle tracking method for 3D fluorescence microscopy image series
L Paavolainen, P Kankaanpää, P Ruusuvuori, G McNerney, ...
2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), 672-675, 2012
122012
Spatial immunoprofiling of the intratumoral and peritumoral tissue of renal cell carcinoma patients
O Brück, MH Lee, R Turkki, I Uski, P Penttilä, L Paavolainen, P Kovanen, ...
Modern Pathology 34 (12), 2229-2241, 2021
102021
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Articles 1–20