| Abatacept in early diffuse cutaneous systemic sclerosis: results of a phase II investigator‐initiated, multicenter, double‐blind, randomized, placebo‐controlled trial D Khanna, C Spino, S Johnson, L Chung, ML Whitfield, CP Denton, ... Arthritis & rheumatology 72 (1), 125-136, 2020 | 191 | 2020 |
| Systematic pan-cancer analysis reveals immune cell interactions in the tumor microenvironment FS Varn, Y Wang, DW Mullins, S Fiering, C Cheng Cancer research 77 (6), 1271-1282, 2017 | 150 | 2017 |
| A machine learning classifier for assigning individual patients with systemic sclerosis to intrinsic molecular subsets JM Franks, V Martyanov, G Cai, Y Wang, Z Li, TA Wood, ML Whitfield Arthritis & rheumatology 71 (10), 1701-1710, 2019 | 66 | 2019 |
| Genomic characterization of six virus-associated cancers identifies changes in the tumor immune microenvironment and altered genetic programs FS Varn, E Schaafsma, Y Wang, C Cheng Cancer research 78 (22), 6413-6423, 2018 | 37 | 2018 |
| Multifactorial deep learning reveals pan-cancer genomic tumor clusters with distinct immunogenomic landscape and response to immunotherapy F Xie, J Zhang, J Wang, A Reuben, W Xu, X Yi, FS Varn, Y Ye, J Cheng, ... Clinical Cancer Research 26 (12), 2908-2920, 2020 | 35 | 2020 |
| Machine learning predicts stem cell transplant response in severe scleroderma JM Franks, V Martyanov, Y Wang, TA Wood, A Pinckney, LJ Crofford, ... Annals of the rheumatic diseases 79 (12), 1608-1615, 2020 | 34 | 2020 |
| AB cell-derived gene expression signature associates with an immunologically active tumor microenvironment and response to immune checkpoint blockade therapy FS Varn, Y Wang, C Cheng Oncoimmunology 8 (1), e1513440, 2019 | 24 | 2019 |
| BioMethyl: an R package for biological interpretation of DNA methylation data Y Wang, JM Franks, ML Whitfield, C Cheng Bioinformatics 35 (19), 3635-3641, 2019 | 22 | 2019 |
| Computational Investigation of Homologous Recombination DNA Repair Deficiency in Sporadic Breast Cancer Y Wang, MH Ung, S Cantor, C Cheng Scientific Reports 7, 2017 | 11 | 2017 |
| Cancer cell line specific co-factors modulate the FOXM1 cistrome Y Wang, MH Ung, T Xia, W Cheng, C Cheng Oncotarget 8 (44), 76498, 2017 | 9 | 2017 |
| Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier Y Chen, Y Wang, LA Salas, TW Miller, K Mark, JD Marotti, AN Kettenbach, ... Breast Cancer Research 21, 1-13, 2019 | 8 | 2019 |
| A genomic meta-analysis of clinical variables and their association with intrinsic molecular subsets in systemic sclerosis JM Franks, DM Toledo, V Martyanov, Y Wang, S Huang, TA Wood, ... Rheumatology 62 (1), 19-28, 2023 | 6 | 2023 |
| Contextual refinement of regulatory targets reveals effects on breast cancer prognosis of the regulome E Andrews, Y Wang, T Xia, W Cheng, C Cheng PLOS Computational Biology 13 (1), e1005340, 2017 | 6 | 2017 |
| A case of recalcitrant linear morphea responding to subcutaneous abatacept J Talia, C Bitar, Y Wang, ML Whitfield, D Khanna Journal of scleroderma and related disorders 6 (2), 194-198, 2021 | 5 | 2021 |
| Regulator combinations identify systemic sclerosis patients with more severe disease Y Wang, JM Franks, M Yang, DM Toledo, TA Wood, M Hinchcliff, ... JCI insight 5 (17), 2020 | 5 | 2020 |
| Application of RNAi-induced gene expression profiles for prognostic prediction in breast cancer Y Wang, KMK Mark, MH Ung, A Kettenbach, T Miller, W Xu, W Cheng, ... Genome medicine 8, 1-15, 2016 | 3 | 2016 |
| Machine-learning classification identifies early systemic sclerosis patients that improve with abatacept treatment by modulating CD28-pathways BK Mehta, ME Espinoza, JM Franks, Y Yuan, Y Wang, T Wood, ... JCI Insight 7 (24), e155282, 2022 | 2 | 2022 |
| Whole transcriptome signature for prognostic prediction (WTSPP): application of whole transcriptome signature for prognostic prediction in cancer E Schaafsma, Y Zhao, Y Wang, FS Varn, K Zhu, H Yang, C Cheng Laboratory Investigation 100 (10), 1356-1366, 2020 | 1 | 2020 |
| Application of somatic mutation-based expression profiles for high-throughput phenotyping in cancer FS Varn, Y Wang, C Cheng Cancer Research 77 (13_Supplement), 392-392, 2017 | | 2017 |
Chao ChengBaylor College of MedicineVerified email at bcm.edu
