Alejandro F. Villaverde
Alejandro F. Villaverde
Universidade de Vigo
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Citado por
Reverse engineering and identification in systems biology: strategies, perspectives and challenges
AF Villaverde, JR Banga
Journal of the Royal Society Interface 11 (91), 20130505, 2014
Structural identifiability of dynamic systems biology models
AF Villaverde, A Barreiro, A Papachristodoulou
PLoS computational biology 12 (10), e1005153, 2016
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
JA Egea, D Henriques, T Cokelaer, AF Villaverde, JR Banga, ...
BMC Bioinformatics 15, 136, 2014
Benchmarking optimization methods for parameter estimation in large kinetic models
AF Villaverde, F Fröhlich, D Weindl, J Hasenauer, JR Banga
Bioinformatics 35 (5), 830–838, 2019
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems
A Gábor, AF Villaverde, JR Banga
BMC systems biology 11, 1-16, 2017
MIDER: network inference with mutual information distance and entropy reduction
AF Villaverde, J Ross, F Morán, JR Banga
PloS one 9 (5), e96732, 2014
Observability and structural identifiability of nonlinear biological systems
AF Villaverde
Complexity 2019 (1), 8497093, 2019
Full observability and estimation of unknown inputs, states and parameters of nonlinear biological models
AF Villaverde, N Tsiantis, JR Banga
Journal of the Royal Society Interface 16 (156), 20190043, 2019
Reset control for passive bilateral teleoperation
AF Villaverde, AB Blas, J Carrasco, AB Torrico
IEEE Transactions on Industrial Electronics 58 (7), 3037-3045, 2011
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology
AF Villaverde, D Henriques, K Smallbone, S Bongard, J Schmid, ...
BMC systems biology 9, 1-15, 2015
On the relationship between sloppiness and identifiability
OT Chis, AF Villaverde, JR Banga, E Balsa-Canto
Mathematical biosciences 282, 147-161, 2016
Structural identifiability and observability of compartmental models of the COVID-19 pandemic
G Massonis, JR Banga, AF Villaverde
Annual reviews in control 51, 441-459, 2021
A cooperative strategy for parameter estimation in large scale systems biology models
AF Villaverde, JA Egea, JR Banga
BMC systems biology 6, 1-17, 2012
PEtab—Interoperable specification of parameter estimation problems in systems biology
L Schmiester, Y Schälte, FT Bergmann, T Camba, E Dudkin, J Egert, ...
PLoS computational biology 17 (1), e1008646, 2021
Reverse engineering cellular networks with information theoretic methods
AF Villaverde, J Ross, JR Banga
Cells 2 (2), 306-329, 2013
Input-dependent structural identifiability of nonlinear systems
AF Villaverde, ND Evans, MJ Chappell, JR Banga
IEEE Control Systems Letters 3 (2), 272-277, 2018
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
D Henriques, AF Villaverde, M Rocha, J Saez-Rodriguez, JR Banga
PLoS computational biology 13 (2), e1005379, 2017
Identifiability of large nonlinear biochemical networks
AF Villaverde, A Barreiro
MATCH Commun. Math. Comput. Chem 76 (2), 259-296, 2016
A protocol for dynamic model calibration
AF Villaverde, D Pathirana, F Fröhlich, J Hasenauer, JR Banga
Briefings in bioinformatics 23 (1), bbab387, 2022
Metabolic engineering with multi-objective optimization of kinetic models
AF Villaverde, S Bongard, K Mauch, E Balsa-Canto, JR Banga
Journal of biotechnology 222, 1-8, 2016
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