| SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts MC Ryan, J Cleland, RG Kim, WC Wong, JN Weinstein Bioinformatics 28 (18), 2385-2387, 2012 | 211 | 2012 |
| Assessment of programs for ligand binding affinity prediction R Kim, J Skolnick Journal of computational chemistry 29 (8), 1316-1331, 2008 | 185 | 2008 |
| Genome-wide depletion of replication initiation events in highly transcribed regions MM Martin, M Ryan, RG Kim, AL Zakas, H Fu, CM Lin, WC Reinhold, ... Genome research 21 (11), 1822-1832, 2011 | 143 | 2011 |
| Methylation of histone H3 on lysine 79 associates with a group of replication origins and helps limit DNA replication once per cell cycle H Fu, AK Maunakea, MM Martin, L Huang, Y Zhang, M Ryan, RG Kim, ... PLoS genetics 9 (6), e1003542, 2013 | 120 | 2013 |
| MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures N Niknafs, D Kim, RG Kim, M Diekhans, M Ryan, PD Stenson, DN Cooper, ... Human genetics 132, 1235-1243, 2013 | 81 | 2013 |
| The DNA repair endonuclease Mus81 facilitates fast DNA replication in the absence of exogenous damage H Fu, MM Martin, M Regairaz, L Huang, Y You, CM Lin, M Ryan, RG Kim, ... Nature communications 6 (1), 6746, 2015 | 64 | 2015 |
| CRAVAT 4: cancer-related analysis of variants toolkit DL Masica, C Douville, C Tokheim, R Bhattacharya, RG Kim, K Moad, ... Cancer research 77 (21), e35-e38, 2017 | 60 | 2017 |
| Systematic analysis of short internal indels and their impact on protein folding RG Kim, J Guo BMC structural biology 10, 1-11, 2010 | 57 | 2010 |
| A replicator-specific binding protein essential for site-specific initiation of DNA replication in mammalian cells Y Zhang, L Huang, H Fu, OK Smith, CM Lin, K Utani, M Rao, WC Reinhold, ... Nature communications 7 (1), 11748, 2016 | 33 | 2016 |
| PDA: an automatic and comprehensive analysis program for protein-DNA complex structures RG Kim, J Guo BMC genomics 10, 1-9, 2009 | 24 | 2009 |
| An efficient cell-free protein synthesis system using periplasmic phosphatase-removed S30 extract SH Kang, TJ Oh, RG Kim, TJ Kang, SH Hwang, EY Lee, CY Choi Journal of microbiological methods 43 (2), 91-96, 2000 | 23 | 2000 |
| ColoWeb: a resource for analysis of colocalization of genomic features RG Kim, OK Smith, WC Wong, AM Ryan, MC Ryan, MI Aladjem BMC genomics 16, 1-9, 2015 | 18 | 2015 |
| Benchmarks for flexible and rigid transcription factor-DNA docking RG Kim, RI Corona, B Hong, J Guo BMC structural biology 11, 1-10, 2011 | 14 | 2011 |
| TFinDit: transcription factor-DNA interaction data depository D Turner, RG Kim, J Guo BMC bioinformatics 13, 1-6, 2012 | 12 | 2012 |
| An efficient translational termination of human erythropoietin in Escherichia coli by altering the base following the stop codon SH Kang, ST Jung, TJ Kang, RG Kim, SH Suh, JH Woo, EY Lee, CY Choi Biotechnology techniques 13, 761-764, 1999 | 4 | 1999 |
| Correction: Methylation of Histone H3 on Lysine 79 Associates with a Group of Replication Origins and Helps Limit DNA Replication Once per Cell Cycle H Fu, AK Maunakea, MM Martin, L Huang, Y Zhang, M Ryan, RG Kim, ... PLoS Genetics 9 (7), 2013 | 1 | 2013 |
| SpliceSeq 2.0: A tool for analysis and visualization of splicing variation in RNASeq data MC Ryan, J Cleland, R Kim, WC Wong, JN Weinstein Europe PMC free article, 0 | 1 | |
| Molecular and functional profiling unravels targetable vulnerabilities in colorectal cancer EI Vlachavas, K Voutetakis, V Kosmidou, S Tsikalakis, S Roditis, K Pateas, ... bioRxiv, 2024.04. 17.589725, 2024 | | 2024 |
| From Mutation Analysis to Pathways and Back: Interoperability between CRAVAT/MuPIT and NDEx RG Kim, D Gygax, M Ryan, D Pratt, V Rynkov, RT Pillich, J Chen, ... | | |
