| Snakemake—a scalable bioinformatics workflow engine J Köster, S Rahmann Bioinformatics 28 (19), 2520-2522, 2012 | 1779 | 2012 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 534 | 2018 |
| Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3 M Martin, L Maßhöfer, P Temming, S Rahmann, C Metz, N Bornfeld, ... Nature genetics 45 (8), 933-936, 2013 | 450 | 2013 |
| Mutational dynamics between primary and relapse neuroblastomas A Schramm, J Köster, Y Assenov, K Althoff, M Peifer, E Mahlow, ... Nature genetics 47 (8), 872-877, 2015 | 284 | 2015 |
| HMM Logos for visualization of protein families B Schuster-Böckler, J Schultz, S Rahmann BMC bioinformatics 5 (1), 1-8, 2004 | 262 | 2004 |
| Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018 | 239 | 2018 |
| Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma JH Schulte, T Marschall, M Martin, P Rosenstiel, P Mestdagh, S Schlierf, ... Nucleic acids research 38 (17), 5919-5928, 2010 | 211 | 2010 |
| Sustainable data analysis with Snakemake F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... F1000Research 10, 2021 | 190 | 2021 |
| A comprehensive molecular study on Coffin–Siris and Nicolaides–Baraitser syndromes identifies a broad molecular and clinical spectrum converging on altered chromatin remodeling D Wieczorek, N Boegershausen, F Beleggia, S Steiner-Haldenstaett, ... Human molecular genetics 22 (25), 5121-5135, 2013 | 180 | 2013 |
| A mechanistic classification of clinical phenotypes in neuroblastoma S Ackermann, M Cartolano, B Hero, A Welte, Y Kahlert, A Roderwieser, ... Science 362 (6419), 1165-1170, 2018 | 164 | 2018 |
| Partitioning biological data with transitivity clustering T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ... Nature methods 7 (6), 419-420, 2010 | 128 | 2010 |
| On the power of profiles for transcription factor binding site detection S Rahmann, T Müller, M Vingron Statistical applications in genetics and molecular biology 2 (1), 2003 | 128 | 2003 |
| N6-adenosine methylation in MiRNAs T Berulava, S Rahmann, K Rademacher, L Klein-Hitpass, B Horsthemke PloS one 10 (2), e0118438, 2015 | 118 | 2015 |
| Supratentorial ependymomas of childhood carry C11orf95–RELA fusions leading to pathological activation of the NF-κB signaling pathway T Pietsch, I Wohlers, T Goschzik, V Dreschmann, D Denkhaus, E Dörner, ... Acta neuropathologica 127 (4), 609-611, 2014 | 109 | 2014 |
| Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing T Wittkop, J Baumbach, FP Lobo, S Rahmann BMC bioinformatics 8 (1), 1-12, 2007 | 97 | 2007 |
| Exact and heuristic algorithms for weighted cluster editing S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker Computational Systems Bioinformatics: (Volume 6), 391-401, 2007 | 89 | 2007 |
| Non-symmetric score matrices and the detection of homologous transmembrane proteins T Müller, S Rahmann, M Rehmsmeier Bioinformatics 17 (suppl_1), S182-S189, 2001 | 89 | 2001 |
| Algorithms for subsequence combinatorics C Elzinga, S Rahmann, H Wang Theoretical Computer Science 409 (3), 394-404, 2008 | 88 | 2008 |
| SimLoRD: simulation of long read data BK Stöcker, J Köster, S Rahmann Bioinformatics 32 (17), 2704-2706, 2016 | 86 | 2016 |
| Group testing with DNA chips: generating designs and decoding experiments A Schliep, DC Torney, S Rahmann Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE …, 2003 | 77 | 2003 |
Johannes KösterUniversity of Duisburg-EssenVerified email at uni-due.de
