Matthew A. Richards
Matthew A. Richards
Dirección de correo verificada de systemsbiology.org - Página principal
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Multiscale analysis of independent Alzheimer’s cohorts finds disruption of molecular, genetic, and clinical networks by human herpesvirus
B Readhead, JV Haure-Mirande, CC Funk, MA Richards, P Shannon, ...
Neuron 99 (1), 64-82. e7, 2018
3542018
MotifDb: An annotated collection of protein-DNA binding sequence motifs
P Shannon, M Richards
R package version 1 (0), 2014
432014
Exploring hydrogenotrophic methanogenesis: a genome scale metabolic reconstruction of Methanococcus maripaludis
MA Richards, TJ Lie, J Zhang, SW Ragsdale, JA Leigh, ND Price
Journal of bacteriology 198 (24), 3379-3390, 2016
302016
Reproducible big data science: A case study in continuous FAIRness
R Madduri, K Chard, M D’Arcy, SC Jung, A Rodriguez, D Sulakhe, ...
PloS one 14 (4), e0213013, 2019
222019
MediaDB: a database of microbial growth conditions in defined media
MA Richards, V Cassen, BD Heavner, NE Ajami, A Herrmann, ...
PLoS One 9 (8), e103548, 2014
212014
A synthesis of bacterial and archaeal phenotypic trait data
JS Madin, DA Nielsen, M Brbic, R Corkrey, D Danko, K Edwards, ...
Scientific data 7 (1), 1-8, 2020
92020
MotifDb: An annotated collection of protein-DNA binding sequence motifs. R package version 1.0. 0
P Shannon, M Richards
Computer software], URL: http://bioconductor. org/biocLite, 2014
72014
Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data Across 27 Tissue Types
CC Funk, AM Casella, S Jung, MA Richards, A Rodriguez, P Shannon, ...
Cell reports 32 (7), 108029, 2020
62020
Constraint‐based modelling captures the metabolic versatility of Desulfovibrio vulgaris
JJ Flowers, MA Richards, N Baliga, B Meyer, DA Stahl
Environmental microbiology reports 10 (2), 190-201, 2018
62018
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions
B King, T Farrah, MA Richards, M Mundy, E Simeonidis, ND Price
Bioinformatics 34 (9), 1594-1596, 2018
42018
O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE
CC Funk, MA Richards, P Shannon, R Donovan-Maiye, N Rappaport, ...
Alzheimer's & Dementia 14 (7S_Part_19), P1014-P1015, 2018
2018
Mighty morphing metabolic models: leveraging manual curations for automatic metabolic reconstruction of clades
M Richards, B King, E Simeonidis, N Price
F1000Research 5, 2016
2016
Integrating manual and automated metabolic engineering methods
MA Richards
University of Illinois at Urbana-Champaign, 2016
2016
Improving Methanosarcina genome-scale models for strain design by incorporating cofactor specificity and free energy constraints
M Richards
2013
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Artículos 1–14