| The oral metagenome in health and disease P Belda-Ferre, LD Alcaraz, R Cabrera-Rubio, H Romero, A Simón-Soro, ... The ISME journal 6 (1), 46-56, 2012 | 622 | 2012 |
| Healthy infants harbor intestinal bacteria that protect against food allergy T Feehley, CH Plunkett, R Bao, SM Choi Hong, E Culleen, P Belda-Ferre, ... Nature medicine 25 (3), 448-453, 2019 | 374 | 2019 |
| Global chemical effects of the microbiome include new bile-acid conjugations RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ... Nature 579 (7797), 123-129, 2020 | 363 | 2020 |
| Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ... Nature 609 (7925), 101-108, 2022 | 248 | 2022 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 238 | 2019 |
| Microbiota diversity and gene expression dynamics in human oral biofilms A Benítez-Páez, P Belda-Ferre, A Simón-Soro, A Mira BMC genomics 15, 1-13, 2014 | 198 | 2014 |
| A tissue-dependent hypothesis of dental caries A Simón-Soro, P Belda-Ferre, R Cabrera-Rubio, LD Alcaraz, A Mira Caries research 47 (6), 591-600, 2013 | 184 | 2013 |
| Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities JM Gonzalez, MC Portillo, P Belda-Ferre, A Mira PloS one 7 (1), e29973, 2012 | 166 | 2012 |
| High-throughput wastewater SARS-CoV-2 detection enables forecasting of community infection dynamics in San Diego County S Karthikeyan, N Ronquillo, P Belda-Ferre, D Alvarado, T Javidi, ... Msystems 6 (2), 10.1128/msystems. 00045-21, 2021 | 104 | 2021 |
| Identifying a healthy oral microbiome through metagenomics LD Alcaraz, P Belda‐Ferre, R Cabrera‐Rubio, H Romero, Á Simón‐Soro, ... Clinical Microbiology and Infection 18 (s4), 54-57, 2012 | 102 | 2012 |
| Streptococcus dentisani sp. nov., a novel member of the mitis group A Camelo-Castillo, A Benítez-Páez, P Belda-Ferre, R Cabrera-Rubio, ... Int J Syst Evol Microbiol 64 (Pt 1), 60-65, 2014 | 100 | 2014 |
| Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range … Z Chen, L Pham, TC Wu, G Mo, Y Xia, PL Chang, D Porter, T Phan, H Che, ... Genome research 30 (6), 898-909, 2020 | 99* | 2020 |
| Human skin, oral, and gut microbiomes predict chronological age S Huang, N Haiminen, AP Carrieri, R Hu, L Jiang, L Parida, B Russell, ... Msystems 5 (1), 10.1128/msystems. 00630-19, 2020 | 90 | 2020 |
| The human oral metaproteome reveals potential biomarkers for caries disease P Belda‐Ferre, J Williamson, Á Simón‐Soro, A Artacho, ON Jensen, ... Proteomics 15 (20), 3497-3507, 2015 | 82 | 2015 |
| Detection of transient bacteraemia following dental extractions by 16S rDNA pyrosequencing: a pilot study A Benítez-Páez, M Álvarez, P Belda-Ferre, S Rubido, A Mira, I Tomás PloS one 8 (3), e57782, 2013 | 71 | 2013 |
| Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination A Bolze, T Basler, S White, A Dei Rossi, D Wyman, H Dai, ... Med 3 (12), 848-859. e4, 2022 | 61 | 2022 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... Microbiome 9 (1), 132, 2021 | 49* | 2021 |
| Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ... Msystems 7 (2), e00167-22, 2022 | 43* | 2022 |
| Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers Q Zhu, Q Hou, S Huang, Q Ou, D Huo, Y Vázquez-Baeza, C Cen, V Cantu, ... The ISME journal 15 (11), 3399-3411, 2021 | 43 | 2021 |
| Emergence of an early SARS-CoV-2 epidemic in the United States M Zeller, K Gangavarapu, C Anderson, AR Smither, JA Vanchiere, ... Cell 184 (19), 4939-4952. e15, 2021 | 40 | 2021 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
